View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11228_high_10 (Length: 386)
Name: NF11228_high_10
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 42442986 - 42443195
Alignment:
| Q |
18 |
gttggtgggtaagggtgatcgaaggagagtgaaggttgaggtttgagtgagagggtatcggggttgaaattgaggatatcgatgcggtttgtgtattctt |
117 |
Q |
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| T |
42442986 |
gttggtgggtaagggtgatcgaaggagagtgaaggttgaggtttgagtgagagggtatcggggttgaaattgagaatatcgatgcggtttgtgtattctt |
42443085 |
T |
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| Q |
118 |
cgatgaagcttccgacggcgatacgttgttgtggggaatttgtgttgggagagatggacatggcgtagagtgggtatggggaatcgtatgttacggagtt |
217 |
Q |
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| T |
42443086 |
cgatgaagcttccgacggcgatacgttgttgtggggaatttgtgttgggagagatggacatggcgtagagtgggtatggggaatcgtatgttacggagtt |
42443185 |
T |
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| Q |
218 |
gttaacggat |
227 |
Q |
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|||| ||||| |
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| T |
42443186 |
gttatcggat |
42443195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 225 - 386
Target Start/End: Complemental strand, 42445239 - 42445078
Alignment:
| Q |
225 |
gatagggaggggaatggcctttccattattggtggaccttcccttgaattgaaccggtcacggagctctccattgagttgtttaggttctggaataccat |
324 |
Q |
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| T |
42445239 |
gatagggaggggaatggactttccattattggtggaccttcccttgaattgaaccggtcacggagctctctcttaagttgtttaggttctggaattccat |
42445140 |
T |
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| Q |
325 |
ctctagttgggggtttaagttcgaaggttatcaaatgtggtgcgggttcatctcactcgacc |
386 |
Q |
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| T |
42445139 |
ctctagttgggggtttaagttcgaaggttatcaaatgtggtgcgggttcatctctctcgacc |
42445078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 249 - 386
Target Start/End: Complemental strand, 19008132 - 19007995
Alignment:
| Q |
249 |
attattggtggaccttcccttgaattgaaccggtcacggagctctccattgagttgtttaggttctggaataccatctctagttgggggtttaagttcga |
348 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |||| |||||||||| |||| ||||||| |
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| T |
19008132 |
attattggtggaccttcccttgaattgaaccaatcacagagctctccattgagatgtttaggttctggaattccatgtctagttgggagtttcagttcga |
19008033 |
T |
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| Q |
349 |
aggttatcaaatgtggtgcgggttcatctcactcgacc |
386 |
Q |
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| T |
19008032 |
aggttatcaaatatgatgcatgctcatctctctcgacc |
19007995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 250 - 386
Target Start/End: Original strand, 22057307 - 22057444
Alignment:
| Q |
250 |
ttattggtggaccttcccttgaattgaaccggtcacggagctctccattgagttgtttaggttctggaataccatctctagttgggggtttaagttcgaa |
349 |
Q |
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||||||||||| |||||||||||||||||| |||| ||| ||||||||| || |||||||||||| |||| |||||||| ||| ||||||| |||||||| |
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| T |
22057307 |
ttattggtggaacttcccttgaattgaaccagtcatggaactctccatttagatgtttaggttctagaattccatctcttgttaggggtttcagttcgaa |
22057406 |
T |
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| Q |
350 |
ggttatc-aaatgtggtgcgggttcatctcactcgacc |
386 |
Q |
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||| ||| |||||||||| ||||||||| ||||||| |
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| T |
22057407 |
ggtcatcaaaatgtggtgtatgttcatctctctcgacc |
22057444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 17047421 - 17047489
Alignment:
| Q |
21 |
ggtgggtaagggtgatcgaaggagagtgaaggttgaggtttgagtgagagggtatcggggttgaaattga |
90 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
17047421 |
ggtgggtaaggatgatcgaaggagagtgaaggatgaggtttgagtgagagggtatc-tggttgaaattga |
17047489 |
T |
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