View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11228_high_4 (Length: 427)
Name: NF11228_high_4
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 19148196 - 19148586
Alignment:
| Q |
19 |
taaccgacttcataagcccgataaccggcccagtcgatgcaaactacttcaccttctcgggctttcgagtccttgttcaaccaccaagcccaaatccacc |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
19148196 |
taaccgacttcataagcccgataactggcccagtcgatgcaaactacttcaccttctcgggctttcgagtccttgttcaacccccaagcccaaacccacc |
19148295 |
T |
|
| Q |
119 |
acctttcaaagcaataaaagcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19148296 |
acctttcaaagcaataaaagcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaat |
19148395 |
T |
|
| Q |
219 |
ccaccacacacacacccacgttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaactagtaaactcttcacacaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
19148396 |
ccaccacacacacacccacgttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaactagaaaactcttcacacaaa |
19148495 |
T |
|
| Q |
319 |
atctttcagttggtgatatgtttatattcccaaagggtcttgttcattttcaacataatgctgatgcaaaggttcctgctcttgctatatc |
409 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19148496 |
atctttcagttggtgatatgtttatattcccaaaaggtcttgttcattttcaacataatgctgatcaaaaggttcctgctcttgctatatc |
19148586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 19144797 - 19144407
Alignment:
| Q |
19 |
taaccgacttcataagcccgataaccggcccagtcgatgcaaactacttcaccttctcgggctttcgagtccttgttcaaccaccaagcccaaatccacc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
19144797 |
taaccgacttcataagcccgataaccggcccagtcgatgcaaactacttcaccttctcgggctttcgcgtccttgttcaacccccaagcccaaacccacc |
19144698 |
T |
|
| Q |
119 |
acctttcaaagcaataaaagcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19144697 |
acctttcaaagcaataaaagcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaat |
19144598 |
T |
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| Q |
219 |
ccaccacacacacacccacgttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacaactagtaaactcttcacacaaa |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
19144597 |
ccaccacacacacacccacgttcagctgaactactctttgttgttcaaggttcacttcaagttgggtttgttgacacagctagcaaactcttcacacaaa |
19144498 |
T |
|
| Q |
319 |
atctttcagttggtgatatgtttatattcccaaagggtcttgttcattttcaacataatgctgatgcaaaggttcctgctcttgctatatc |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19144497 |
atctttcagttggtgatatgtttatattcccaaaaggtcttgttcattttcaacataatgctgatcaaaaggttcctgctcttgctatatc |
19144407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 371
Target Start/End: Original strand, 36421164 - 36421369
Alignment:
| Q |
166 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
265 |
Q |
| |
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||||||||||||| |||||||||||||| | || |||| | ||| ||||||||||| |||||||| |||||||| || |||||||| | ||| | |
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| T |
36421164 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacatacacaccctcgttcagccgagctactcttcctcgttaa |
36421263 |
T |
|
| Q |
266 |
aggttcacttcaagttgggtttgttgacacaactagtaaactcttcacacaaaatctttcagttggtgatatgtttatattcccaaagggtcttgttcat |
365 |
Q |
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|||||| ||| | ||||| |||||||||||||| | ||| || ||||| || | || | |||||| |||||| | || |||||||| ||||||||| |
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| T |
36421264 |
aggttcccttaatgttggttttgttgacacaaccaataagctattcactcagacactacaacctggtgacatgtttgtgtttccaaagggacttgttcat |
36421363 |
T |
|
| Q |
366 |
tttcaa |
371 |
Q |
| |
|
|||||| |
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|
| T |
36421364 |
tttcaa |
36421369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 298
Target Start/End: Original strand, 36424688 - 36424820
Alignment:
| Q |
166 |
atggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatccaccacacacacacccacgttcagctgaactactctttgttgttca |
265 |
Q |
| |
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||||||||||||| |||||||||||||| | || |||| | ||| |||||||||||||||||||| |||||||| || |||||||| | ||| | |
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| T |
36424688 |
atggacaaagtgtatcatatgctgctctaatgtacccacctggaaccatcaatccaccacacacacaccctcgttcagccgagctactcttcctcgttaa |
36424787 |
T |
|
| Q |
266 |
aggttcacttcaagttgggtttgttgacacaac |
298 |
Q |
| |
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|||||| ||| | ||||| || ||||||||||| |
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|
| T |
36424788 |
aggttcccttaatgttggtttcgttgacacaac |
36424820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 256
Target Start/End: Original strand, 36427616 - 36427751
Alignment:
| Q |
121 |
ctttcaaagcaataaaagcaagcatggcagaatttccatcattgaatggacaaagtgtgtcatatgctgctcttcaattccaacctaacagcataaatcc |
220 |
Q |
| |
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|||||||||| | |||||||||| |||||||||||| | | | ||||||||||| ||||||||||||| || || |||| | ||| ||||| |
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| T |
36427616 |
ctttcaaagccttgaaagcaagcaaagcagaatttccagctcttgacggacaaagtgtcgcatatgctgctctaatatacccacctggaaccatcaatcc |
36427715 |
T |
|
| Q |
221 |
accacacacacacccacgttcagctgaactactctt |
256 |
Q |
| |
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||||||||||||||| |||||||| || |||||||| |
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| T |
36427716 |
accacacacacaccctcgttcagccgagctactctt |
36427751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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