View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11228_high_5 (Length: 417)
Name: NF11228_high_5
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_high_5 |
 | |
|
| [»] scaffold0470 (2 HSPs) |
| | |
|
| [»] scaffold0514 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 402
Target Start/End: Original strand, 6811405 - 6811772
Alignment:
| Q |
14 |
agaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagttt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6811405 |
agaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttggttt |
6811504 |
T |
|
| Q |
114 |
aatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6811505 |
aatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaac |
6811604 |
T |
|
| Q |
214 |
gcaaatccacccagtggaaacacaaatccacctagtgccgaaaatcttgacaagttttgttctagtttcaacggcatacttttatgtccgggtgaagctg |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6811605 |
acaaatcca---------------------cctagtgccgaaaatcttgataagttttgttctagtttcaacggcatacttttatgtccgggtgaagctg |
6811683 |
T |
|
| Q |
314 |
tcttagccgctgtaaaacctaaaaaatatagtttgttccttatttccaacacaatttgttttattggatcactaattatttgtatcttc |
402 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6811684 |
tcttagccgctgtaaatcctaaaaaatatagtttgttccttatttccaacacaatttgttttattggatcactaattatttgtatcttc |
6811772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 6840863 - 6841247
Alignment:
| Q |
14 |
agaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagttt |
113 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| ||||||| |||||||||| |||||||||| | || |
|
|
| T |
6840863 |
agaaaggttggagaaaggtattagaagggatagggagttggttgtcctacaaagacaaggag---aaatggttggatgatatgcgagggaacttgggctt |
6840959 |
T |
|
| Q |
114 |
aatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaac |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||| ||||||| | || |||||||| || ||| |
|
|
| T |
6840960 |
aatagcgacagtcatcgcaacaatgacatttcaaatggttttaaatccgcccggtggtgttatgtcgattaaagatggcacagatccacccggtaccaac |
6841059 |
T |
|
| Q |
214 |
gcaaatccacccagtggaaacacaaatccacctagtgccgaaaatcttgacaagttttgttctagtttcaacggcatacttttatgtccgggtgaagctg |
313 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||| || |||||| |||| || | || ||||| || | |||||||||||||||||| |
|
|
| T |
6841060 |
gcaaatccacccagtaccaacgcaaatccaccagatgccgacgattctgacaaaaattgtacttttatctacggcgaacgtctatgtccgggtgaagctg |
6841159 |
T |
|
| Q |
314 |
tcttagccgctgtaaaacctaaaaaatatagtttgttccttatttccaacacaatttgttttattggatcactaattatttgtatctt |
401 |
Q |
| |
|
||||||||| || | || | |||| | |||||||||||||||||||||||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
6841160 |
tcttagccgttggggactcttatggatattttcagttccttatttccaacacaatttgttttgttgcatcactaagtatttgtctctt |
6841247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 6595516 - 6595744
Alignment:
| Q |
14 |
agaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagttt |
113 |
Q |
| |
|
||||||| |||||||||| | |||| |||| ||||||| |||| |||||| ||||||| ||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
6595516 |
agaaaggatggagaaaggtaatagagaagatacggagttggttgtcctacaaaaacaaggac---aaatggttggaggatatgagagggaacttgggttt |
6595612 |
T |
|
| Q |
114 |
aatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaac |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||| ||||||| | ||||||||||||| || |
|
|
| T |
6595613 |
aatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgttatgtcgattaaagatggggaaaatccacccagtaccgac |
6595712 |
T |
|
| Q |
214 |
gcaaatccacccagtggaaacacaaatccacc |
245 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| |
|
|
| T |
6595713 |
gcaagtccacccagtactaacgcaaatccacc |
6595744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 6621330 - 6621558
Alignment:
| Q |
14 |
agaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagttt |
113 |
Q |
| |
|
||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| || ||| ||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
6621330 |
agaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagtcagggac---aaatggttggaggatatgagagggaacttgggttt |
6621426 |
T |
|
| Q |
114 |
aatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaac |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||| ||||||| | ||||||||||||| || |
|
|
| T |
6621427 |
aatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgttatgtcgattaaagatggggaaaatccacccagtaccgac |
6621526 |
T |
|
| Q |
214 |
gcaaatccacccagtggaaacacaaatccacc |
245 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| |
|
|
| T |
6621527 |
gcaagtccacccagtaccaacgcaaatccacc |
6621558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 6632450 - 6632533
Alignment:
| Q |
94 |
atgagagggaactttagtttaatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattagg |
177 |
Q |
| |
|
||||||||||| |||||| || |||||| | |||| |||||||| ||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
6632450 |
atgagagggaattttagtgtagtagcaatattcatagcaacaataacatttcaaatgggtttaaatccaccgggtggcgttagg |
6632533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 6595847 - 6595900
Alignment:
| Q |
348 |
gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| | ||||| |||| |
|
|
| T |
6595847 |
gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt |
6595900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 6621661 - 6621714
Alignment:
| Q |
348 |
gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| | ||||| |||| |
|
|
| T |
6621661 |
gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt |
6621714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 6849966 - 6849913
Alignment:
| Q |
348 |
gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt |
401 |
Q |
| |
|
||||||||| || ||||||||||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
6849966 |
gttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctctt |
6849913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 10748 - 10976
Alignment:
| Q |
14 |
agaaaggttggagaaaggcattagaagggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagttt |
113 |
Q |
| |
|
||||||| |||||||||| |||||| |||| ||||||| |||| ||||||| || ||| ||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
10748 |
agaaaggatggagaaaggtattagagaagatacggagttggttgtcctacaaagtcagggac---aaatggttggaggatatgagagggaacttgggttt |
10844 |
T |
|
| Q |
114 |
aatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaac |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||||| ||||||| | ||||||||||||| || |
|
|
| T |
10845 |
aatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgttatgtcgattaaagatggggaaaatccacccagtaccgac |
10944 |
T |
|
| Q |
214 |
gcaaatccacccagtggaaacacaaatccacc |
245 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| |
|
|
| T |
10945 |
gcaagtccacccagtaccaacgcaaatccacc |
10976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 11079 - 11132
Alignment:
| Q |
348 |
gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| | ||||| |||| |
|
|
| T |
11079 |
gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt |
11132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 832 - 704
Alignment:
| Q |
79 |
aaatggtgggatgatatgagagggaactttagtttaatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattaggt |
178 |
Q |
| |
|
||||||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| || |
|
|
| T |
832 |
aaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatccacccggtggcgttatgt |
733 |
T |
|
| Q |
179 |
cgatgaaagatgacgcaaatccacccagt |
207 |
Q |
| |
|
|||| ||||||| | ||||||||||||| |
|
|
| T |
732 |
cgattaaagatggggaaaatccacccagt |
704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 401
Target Start/End: Complemental strand, 563 - 510
Alignment:
| Q |
348 |
gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||| | ||||| |||| |
|
|
| T |
563 |
gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt |
510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University