View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11228_high_7 (Length: 401)
Name: NF11228_high_7
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 42442986 - 42443241
Alignment:
| Q |
18 |
gttggtgggtaagggtgatcgaaggagagtgaaggttgaggtttgagtgagagggtatcggggttgaaattgaggatatcgatgcggtttgtgtattctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42442986 |
gttggtgggtaagggtgatcgaaggagagtgaaggttgaggtttgagtgagagggtatcggggttgaaattgagaatatcgatgcggtttgtgtattctt |
42443085 |
T |
|
| Q |
118 |
cgatgaagcttccgacggcgatacgttgttgtggggaatttgtgttgggagagatggacatggcgtagagtgggtatggggaatcgtatgttacggagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42443086 |
cgatgaagcttccgacggcgatacgttgttgtggggaatttgtgttgggagagatggacatggcgtagagtgggtatggggaatcgtatgttacggagtt |
42443185 |
T |
|
| Q |
218 |
gttatcggatcggagatgggattcttgtgttgaattatccatttttggtggatggt |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42443186 |
gttatcggatcggagatgggattcttgtgttgaattatccatttttggtggatggt |
42443241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 42443312 - 42443357
Alignment:
| Q |
344 |
tgaaggaagggcacgagccttaaaatctcaactgccttattcttct |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42443312 |
tgaaggaagggcacgagccttaaaatctcaactgccttattcttct |
42443357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 17047421 - 17047489
Alignment:
| Q |
21 |
ggtgggtaagggtgatcgaaggagagtgaaggttgaggtttgagtgagagggtatcggggttgaaattga |
90 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17047421 |
ggtgggtaaggatgatcgaaggagagtgaaggatgaggtttgagtgagagggtatc-tggttgaaattga |
17047489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University