View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11228_low_1 (Length: 1002)

Name: NF11228_low_1
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11228_low_1
NF11228_low_1
[»] chr3 (14 HSPs)
chr3 (18-594)||(26102245-26102820)
chr3 (594-985)||(26100387-26100778)
chr3 (746-863)||(10661982-10662098)
chr3 (759-860)||(4659539-4659640)
chr3 (745-829)||(38417737-38417821)
chr3 (791-854)||(10071574-10071637)
chr3 (762-837)||(32630645-32630719)
chr3 (743-854)||(47570291-47570400)
chr3 (759-860)||(47665236-47665337)
chr3 (759-815)||(21129092-21129148)
chr3 (759-815)||(27157971-27158027)
chr3 (759-854)||(2558755-2558848)
chr3 (745-860)||(54923487-54923602)
chr3 (759-857)||(44791714-44791809)
[»] chr7 (17 HSPs)
chr7 (147-335)||(19527002-19527190)
chr7 (759-867)||(6328200-6328308)
chr7 (759-865)||(41708570-41708674)
chr7 (734-860)||(45957335-45957461)
chr7 (759-861)||(47086327-47086428)
chr7 (764-864)||(37938097-37938197)
chr7 (745-813)||(46910920-46910988)
chr7 (761-860)||(8059846-8059945)
chr7 (734-865)||(12961825-12961956)
chr7 (728-854)||(30627631-30627756)
chr7 (742-828)||(31300005-31300092)
chr7 (759-860)||(9506868-9506969)
chr7 (759-848)||(36251663-36251752)
chr7 (759-860)||(46021457-46021558)
chr7 (759-859)||(46734143-46734242)
chr7 (759-854)||(3043843-3043936)
chr7 (759-828)||(32251362-32251430)
[»] chr1 (20 HSPs)
chr1 (759-860)||(8793201-8793302)
chr1 (759-860)||(32947621-32947722)
chr1 (759-866)||(44836144-44836251)
chr1 (745-851)||(50905444-50905550)
chr1 (759-854)||(15104052-15104145)
chr1 (745-853)||(49773466-49773574)
chr1 (761-864)||(37315082-37315185)
chr1 (759-864)||(7204534-7204639)
chr1 (759-854)||(40962729-40962822)
chr1 (768-854)||(236577-236663)
chr1 (756-866)||(4627987-4628097)
chr1 (759-865)||(27868274-27868380)
chr1 (641-702)||(665866-665927)
chr1 (734-809)||(11403221-11403295)
chr1 (742-828)||(41651106-41651192)
chr1 (759-860)||(8312554-8312655)
chr1 (763-848)||(11080991-11081076)
chr1 (759-864)||(13116923-13117028)
chr1 (743-828)||(23809895-23809979)
chr1 (728-861)||(49632555-49632687)
[»] chr8 (12 HSPs)
chr8 (759-865)||(12320983-12321089)
chr8 (728-864)||(33128160-33128296)
chr8 (759-866)||(40418123-40418230)
chr8 (762-866)||(1522688-1522792)
chr8 (745-851)||(11109869-11109975)
chr8 (792-866)||(41323694-41323768)
chr8 (803-860)||(12631927-12631984)
chr8 (759-828)||(31941061-31941129)
chr8 (742-854)||(2508144-2508254)
chr8 (792-860)||(31291220-31291288)
chr8 (759-859)||(32778500-32778600)
chr8 (776-854)||(25899225-25899303)
[»] chr4 (18 HSPs)
chr4 (739-860)||(13849357-13849478)
chr4 (734-865)||(37759424-37759556)
chr4 (759-865)||(24870593-24870699)
chr4 (750-851)||(9696309-9696410)
chr4 (749-864)||(46107390-46107505)
chr4 (765-848)||(22717111-22717194)
chr4 (745-844)||(33530236-33530335)
chr4 (759-857)||(579269-579365)
chr4 (728-810)||(939638-939719)
chr4 (734-860)||(46343330-46343456)
chr4 (759-861)||(48391689-48391791)
chr4 (759-860)||(28758378-28758479)
chr4 (728-860)||(37340103-37340234)
chr4 (765-848)||(22988023-22988106)
chr4 (791-860)||(38882718-38882788)
chr4 (728-778)||(39585412-39585462)
chr4 (788-837)||(40610677-40610726)
chr4 (759-852)||(41293087-41293180)
[»] scaffold0160 (1 HSPs)
scaffold0160 (728-864)||(22080-22215)
[»] chr5 (14 HSPs)
chr5 (745-864)||(41215247-41215366)
chr5 (739-865)||(22792116-22792242)
chr5 (208-329)||(1682561-1682681)
chr5 (739-860)||(9599313-9599434)
chr5 (742-851)||(17080476-17080583)
chr5 (759-854)||(1612380-1612474)
chr5 (742-853)||(43237817-43237927)
chr5 (203-265)||(1682750-1682812)
chr5 (759-857)||(8487402-8487498)
chr5 (759-864)||(11408370-11408475)
chr5 (739-808)||(6525892-6525961)
chr5 (804-861)||(24406563-24406620)
chr5 (739-860)||(26526514-26526635)
chr5 (210-271)||(34835284-34835345)
[»] chr2 (12 HSPs)
chr2 (728-861)||(18055859-18055991)
chr2 (728-863)||(19954895-19955028)
chr2 (759-854)||(32517844-32517939)
chr2 (742-864)||(9993167-9993289)
chr2 (759-860)||(13491027-13491128)
chr2 (759-864)||(22999072-22999177)
chr2 (759-854)||(39417450-39417544)
chr2 (759-854)||(42200889-42200982)
chr2 (742-828)||(36685413-36685498)
chr2 (759-861)||(37103322-37103424)
chr2 (734-854)||(21840451-21840568)
chr2 (784-861)||(44765225-44765301)
[»] scaffold0027 (1 HSPs)
scaffold0027 (784-860)||(19364-19440)
[»] chr6 (2 HSPs)
chr6 (760-864)||(2747547-2747651)
chr6 (728-854)||(9727502-9727627)
[»] scaffold0633 (1 HSPs)
scaffold0633 (742-828)||(3804-3890)


Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 594
Target Start/End: Complemental strand, 26102820 - 26102245
Alignment:
Q  18 catgcatgaggtttgtactgtatattgggaaccataccctatatacagagtttgtggccaatgtgaatttgaattatgtcaacaaatttggacgataatc 117  Q
    |||||||| ||||||| ||||||||||   |||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  26102820 catgcatgcggtttgttctgtatattgcagaccataacctatatacagagtttgtggccaatgtcaatttgaattatgtctacaaattttgacgataatc 26102721  T
Q  118 agatattatattatatgccaacgagttctatcaaaattaacgtcctatgaactgctatcaaacacacaaatttttatgtatcttattaatatatcaaatg 217  Q
    | ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  26102720 atatattattttatatgccaacgagttctatcaaaattaacatcctataaactgctatcaaacaca--aatttttatgtatcttgttaatatatcaaatg 26102623  T
Q  218 gtatctgattaatatcaaattttatagacatgaattatgtaataatagctttcagtctagtcgtggattttataatgcagttatgtgataacgaattatc 317  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26102622 gtatccgattaatgtcaaattttatagacatgaattatgtgataatagctttcaatctagtcgtggattttataatgcagttatgtgataacgaattatc 26102523  T
Q  318 aaaggtgtcataatatttagattggcatcgtggtgtcaatcgatctatcgtcaaaaaatatattactaatataataaaatggaagtcattcattttatca 417  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26102522 aaaggtgtcataatatttagattggcatcatggtctcaatcgatctatcgtcaaaaaatatattactaatataataaaatggaagtcattcattttatca 26102423  T
Q  418 aaaatgtcatcggtttgacttttaatctcactaatttgat-agtttcatgtcaatttcttattttattttagtataataagatggaagtccttcattttg 516  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26102422 aaaatgccatcggtttgacttttaatctcactaatttgatgggtttcatgtcaatttcttattttattttagtataataagatggaagtccttcattttg 26102323  T
Q  517 tctaaaatgtcctcatggttagtctcttagaatcgtttatttgattggattcttggttgatttgttactttaattaat 594  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  26102322 tctaaaatgtcctcatggttagtctcttagtatcgtttatttgattggattcttggttgatttgttactttatttaat 26102245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 594 - 985
Target Start/End: Complemental strand, 26100778 - 26100387
Alignment:
Q  594 ttaacatagtaaaactgaagtccttcattttctctaaaataatgccctcggttggactcttaatctcacttgtttgatgaacttcttggttaatttgcta 693  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26100778 ttaacataataaaactgaagtccttcattttctctaaaataatgccctcggttggactcttaatctcacttgtttgatgaacttcttggttaatttgcta 26100679  T
Q  694 ttaaataattaggttaatatagaccaaaactttatttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggt 793  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| || |    
T  26100678 ttaaataattaggttaatatagaccaaacctttatttttaagatcgaagaaatgacaaattcatcataaactcacacacataaagtagatgtatctagat 26100579  T
Q  794 tcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatgggactagaccgaaccatttaattaatggaaatt 893  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||    
T  26100578 tcgaacactgatcatgacgtctatcttaacaattttaacatttttgtcagttgagttagtacttatgggactagaccgaaccatttaattaatggaaatt 26100479  T
Q  894 ttctcattttaagaactcattcagacagaccgaacctgcttgagttggtctcgtggtgttggttttggaccatggagtgtgctccttcttag 985  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| |||||| ||||||||    
T  26100478 ttctctttttaagaactcattcagacagaccgaacctgcttgagttgatctgatggtgttggttttggaccatggaatgtgcttcttcttag 26100387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 746 - 863
Target Start/End: Complemental strand, 10662098 - 10661982
Alignment:
Q  746 tgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagtt 845  Q
    ||||||| |||| |||||||||||||| |||||| || |||||| ||||||||| |||| ||||||||||| | |||||||||   ||||||||||||||    
T  10662098 tgacaaagttatcataaactcacacacgtaaagtggaggtatcg-ggttcgaaccccgaccatgacgtccaacctaacaatttcggcatttttgtcagtt 10662000  T
Q  846 gagctaggatttatggga 863  Q
    || ||| || ||||||||    
T  10661999 gaactatgacttatggga 10661982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 759 - 860
Target Start/End: Complemental strand, 4659640 - 4659539
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||||||||| || |||||  ||||||||||||||||| ||| |||  | ||  ||||| | |||||||||||||||||||| || |||    
T  4659640 ataaactcacacacataaagtggaggtatcagggttcgaacaccgatcaagacatccggcctattaatttcagcatttttgtcagttgagctatgactta 4659541  T
Q  859 tg 860  Q
    ||    
T  4659540 tg 4659539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 829
Target Start/End: Original strand, 38417737 - 38417821
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatttt 829  Q
    |||||||| | || |||||||||||||||||||||||  |||||| ||||||||| | | |||||||||||  | ||||||||||    
T  38417737 atgacaaaatcattataaactcacacacataaagtaggggtatcggggttcgaactctggtcatgacgtccgacctaacaatttt 38417821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 791 - 854
Target Start/End: Original strand, 10071574 - 10071637
Alignment:
Q  791 ggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    ||||||||| |||| |||| | |||| | |||||||||| ||||||||||||||||||||||||    
T  10071574 ggttcgaaccccgaccatggcatccagcctaacaattttgacatttttgtcagttgagctagga 10071637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 762 - 837
Target Start/End: Original strand, 32630645 - 32630719
Alignment:
Q  762 aactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttt 837  Q
    ||||||||||||||| || || ||| |||||||||||| || |||||||| |||| ||||||||||||| ||||||    
T  32630645 aactcacacacataa-gtggaggtaccgaggttcgaactccaatcatgacatccagcttaacaattttagcatttt 32630719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 743 - 854
Target Start/End: Complemental strand, 47570400 - 47570291
Alignment:
Q  743 aaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtca 842  Q
    |||||||||| | || ||||||||||||||||||| | || ||| || ||||||||| | ||| ||||| |||  |||||||||||| ||| |||||| |    
T  47570400 aaatgacaaagtcattataaactcacacacataaa-tggaggtaccggggttcgaaccctgattatgacatccggcttaacaattttgaca-ttttgtga 47570303  T
Q  843 gttgagctagga 854  Q
    ||||||||||||    
T  47570302 gttgagctagga 47570291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 860
Target Start/End: Original strand, 47665236 - 47665337
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||||||||| || |||| |  |||| ||| ||||||| || ||||  | |||||||||  ||||||||||| |||||| ||||| |||    
T  47665236 ataaactcacacacataaagtggaggtattggagttcaaaccccgatcaagatgtccggcctaacaatttcgacatttttgtcggttgagttaggagtta 47665335  T
Q  859 tg 860  Q
    ||    
T  47665336 tg 47665337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 759 - 815
Target Start/End: Complemental strand, 21129148 - 21129092
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtcc 815  Q
    ||||||||||| ||| |||||||| ||| || ||||||||| |||||||||||||||    
T  21129148 ataaactcacaaacacaaagtagaggtaccggggttcgaaccccgatcatgacgtcc 21129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 759 - 815
Target Start/End: Complemental strand, 27158027 - 27157971
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtcc 815  Q
    ||||||||| ||||||||| |||| |||| ||||||||||| |||||||| ||||||    
T  27158027 ataaactcatacacataaaatagaggtattgaggttcgaaccccgatcataacgtcc 27157971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 854
Target Start/End: Complemental strand, 2558848 - 2558755
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    |||||||||||||||||| || || |||||| ||||| ||| ||||||||||| |||  | ||||||||| | || ||||| ||||||||||||||    
T  2558848 ataaactcacacacataa-gtggaggtatcggggttcaaaccccgatcatgacatccgacctaacaatttcagca-ttttgccagttgagctagga 2558755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 745 - 860
Target Start/End: Complemental strand, 54923602 - 54923487
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagt 844  Q
    |||||||| | || ||||| ||||||||| ||| | || ||||||  |||||||| ||| |||||||||||  | |||||||||  ||||||||  ||||    
T  54923602 atgacaaaatcatcataaattcacacacacaaaatggaagtatcggagttcgaaccccggtcatgacgtccgacctaacaatttcgacatttttaccagt 54923503  T
Q  845 tgagctaggatttatg 860  Q
    |||| ||||| |||||    
T  54923502 tgagttaggacttatg 54923487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 759 - 857
Target Start/End: Complemental strand, 44791809 - 44791714
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattt 857  Q
    |||||||||||||||||| || || ||| || ||||||||| ||||||||| |||||    ||||||||||| |||||| | |||||||||||||||||    
T  44791809 ataaactcacacacataa-gtggaggtaacggggttcgaaccccgatcatg-cgtccggtctaacaattttagcatttt-gccagttgagctaggattt 44791714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 3e-23; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 147 - 335
Target Start/End: Complemental strand, 19527190 - 19527002
Alignment:
Q  147 atcaaaattaacgtcctatgaactgctatcaaacacacaaatttttatgtatcttattaatatatcaaatggtatctgattaatatcaaattttatagac 246  Q
    ||||||||||||||  ||||||||  |||||| | |   ||||||||||||| |  |||| |||||| || ||||||||||||| ||||||||| | |||    
T  19527190 atcaaaattaacgttttatgaacttttatcaagcgcgttaatttttatgtatgtcgttaacatatcatattgtatctgattaatgtcaaattttgttgac 19527091  T
Q  247 atgaattatgtaataatagctttcagtctagtcgtggattttataatgcagttatgtgataacgaattatcaaaggtgtcataatattt 335  Q
    ||||  ||||| ||||||||||||| || |   ||||||||| ||||||| ||||||| ||| ||||||||  |||||||||| |||||    
T  19527090 atgatctatgtgataatagctttcaatccaacggtggattttgtaatgcaattatgtggtaaagaattatcggaggtgtcatattattt 19527002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 759 - 867
Target Start/End: Original strand, 6328200 - 6328308
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||||||||| || |||||| ||||||||| |   |||||||||||| | |||||||||| ||||||||| ||||||||||| || |||    
T  6328200 ataaactcacacacataaagtggaggtatcggggttcgaaccctagtcatgacgtccaacctaacaattttgacatttttgccagttgagctaagactta 6328299  T
Q  859 tgggactag 867  Q
    || ||||||    
T  6328300 tgagactag 6328308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 759 - 865
Target Start/End: Original strand, 41708570 - 41708674
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||| |||  |||| || |||||| ||||||||| |||||||| || |||  | |||||||||| |||||||| |||||||||||||||||||    
T  41708570 ataaactcacataca--aagtggaggtatcggggttcgaaccccgatcataacatccgacctaacaattttgacatttttatcagttgagctaggattta 41708667  T
Q  859 tgggact 865  Q
    || ||||    
T  41708668 tgagact 41708674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 734 - 860
Target Start/End: Original strand, 45957335 - 45957461
Alignment:
Q  734 agatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaaca 833  Q
    |||| ||||| |||||||| |  | ||||||| ||||||| ||||| || ||| || ||||||||| | |||||||||||||   |||||||||||  ||    
T  45957335 agatagaagagatgacaaagtcttcataaactaacacacacaaagtggaggtaccggggttcgaaccctgatcatgacgtccggtttaacaattttggca 45957434  T
Q  834 tttttgtcagttgagctaggatttatg 860  Q
    |||||| || ||||||||||| |||||    
T  45957435 tttttgccaattgagctaggacttatg 45957461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 759 - 861
Target Start/End: Original strand, 47086327 - 47086428
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    |||||||||||||||||| || || ||| |  ||||||||| ||||||||| | |||  | |||||||||  |||||||||||||||||||||||| |||    
T  47086327 ataaactcacacacataa-gtggaggtaacagggttcgaaccccgatcatggcatccggcctaacaatttcgacatttttgtcagttgagctaggactta 47086425  T
Q  859 tgg 861  Q
    |||    
T  47086426 tgg 47086428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 764 - 864
Target Start/End: Original strand, 37938097 - 37938197
Alignment:
Q  764 ctcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatggga 863  Q
    |||||||||||||||| || |||| || ||| |||||||||||||||||||   | ||||||||| |||||||||  ||||||| ||| |  ||||||||    
T  37938097 ctcacacacataaagtggaggtattgatgtttgaacaccgatcatgacgtctgacctaacaatttcaacatttttaccagttgaactacggattatggga 37938196  T
Q  864 c 864  Q
    |    
T  37938197 c 37938197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 745 - 813
Target Start/End: Original strand, 46910920 - 46910988
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgt 813  Q
    ||||||||| ||| ||||||||| ||||| ||||| || ||| |||||||||||| |||||||||||||    
T  46910920 atgacaaatctatcataaactcagacacacaaagttgaggtaccgaggttcgaaccccgatcatgacgt 46910988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 761 - 860
Target Start/End: Complemental strand, 8059945 - 8059846
Alignment:
Q  761 aaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatg 860  Q
    ||||||||||| | ||||| || ||| || ||||||||| |||||||||||| ||  | |||||||||| ||||||||| || |||||| |||| |||||    
T  8059945 aaactcacacatacaaagttgaggtaccggggttcgaaccccgatcatgacgcccgacctaacaattttgacatttttgccaattgagccaggacttatg 8059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 734 - 865
Target Start/End: Original strand, 12961825 - 12961956
Alignment:
Q  734 agatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaaca 833  Q
    |||| ||||| |||||||| | || ||||||||||||||| ||| |  | ||| |||||||||||| |||||||||| ||||  | |||||||||  |||    
T  12961825 agatagaagagatgacaaagtcatcataaactcacacacacaaattgaaggtaccgaggttcgaactccgatcatgatgtccggcctaacaatttctaca 12961924  T
Q  834 tttttgtcagttgagctaggatttatgggact 865  Q
    |||||   ||||||| ||||| ||||| ||||    
T  12961925 tttttactagttgagttaggacttatgagact 12961956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 728 - 854
Target Start/End: Complemental strand, 30627756 - 30627631
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtcc-atcttaacaat 826  Q
    ||||| |||| || ||||||||||| | ||  |||||||||||||| || || || ||| || |||||||||  |||||||||| ||| |||| ||||||    
T  30627756 ttttttagatagacgaaatgacaaagtcattgtaaactcacacacacaa-gtggaggtaccggggttcgaacctcgatcatgacatccgatct-aacaat 30627659  T
Q  827 tttaacatttttgtcagttgagctagga 854  Q
    ||  ||||||||||||||||||||||||    
T  30627658 ttcgacatttttgtcagttgagctagga 30627631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 742 - 828
Target Start/End: Original strand, 31300005 - 31300092
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacata-aagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattt 828  Q
    ||||||||||| |||| ||||||||||||||| | |||| || ||| |||||||||||| ||| ||||||| |||  |||||||||||    
T  31300005 gaaatgacaaagttattataaactcacacacacataagtggaggtaccgaggttcgaaccccggtcatgacatccggcttaacaattt 31300092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 860
Target Start/End: Original strand, 9506868 - 9506969
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| ||||| || ||| ||  ||||||||  || |||||| ||||  | |||||||||| | ||||||||||||| |||||||| |||    
T  9506868 ataaactcacacacacaaagtggaggtaccggagttcgaacctcggtcatgatgtccggcctaacaattttgatatttttgtcagttaagctaggactta 9506967  T
Q  859 tg 860  Q
    ||    
T  9506968 tg 9506969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 848
Target Start/End: Complemental strand, 36251752 - 36251663
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgag 848  Q
    ||||||||||||||||||||| ||  || || |||||||||  ||  ||||||||||  | ||||||||| | |||||||||||||||||    
T  36251752 ataaactcacacacataaagtggaaataccggggttcgaacctcggccatgacgtccggcctaacaatttcagcatttttgtcagttgag 36251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 860
Target Start/End: Original strand, 46021457 - 46021558
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| ||| | || ||| || ||||||||| ||| ||||||| |||  | |||||||||   ||||||| ||||||||||||||| |||    
T  46021457 ataaactcacacacacaaaatggaggtaccggggttcgaaccccggtcatgacatccggcctaacaatttcggcatttttatcagttgagctaggactta 46021556  T
Q  859 tg 860  Q
    ||    
T  46021557 tg 46021558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 759 - 859
Target Start/End: Original strand, 46734143 - 46734242
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| || || || ||| || ||||||||| ||||||||||| |||| | |||||||||  ||||||||| || ||||| ||||| |||    
T  46734143 ataaactcacacacacaa-gtggaggtaacggggttcgaaccccgatcatgacatccagcctaacaatttcgacatttttgccaattgagttaggactta 46734241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 854
Target Start/End: Original strand, 3043843 - 3043936
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    |||||||||||||||| |||| || |||||| ||||||||| || |||||||| |||  | ||||||||| |||| |||| ||| |||||||||||    
T  3043843 ataaactcacacacat-aagtggaggtatcggggttcgaactccaatcatgacatccggcctaacaatttcaaca-ttttatcaattgagctagga 3043936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 759 - 828
Target Start/End: Original strand, 32251362 - 32251430
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattt 828  Q
    |||||||||||||||||| || || |||||| ||||||||| ||| ||||||| |||  |||||||||||    
T  32251362 ataaactcacacacataa-gtggaggtatcggggttcgaaccccggtcatgacatccgacttaacaattt 32251430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 759 - 860
Target Start/End: Original strand, 8793201 - 8793302
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| ||||| || ||| || ||||||||| ||| ||||||||| |  |||||||||||| | ||||||| ||||||||||||||||||    
T  8793201 ataaactcacacacacaaagtggaggtaccggggttcgaaccccggtcatgacgtacggcttaacaattttgatatttttgccagttgagctaggattta 8793300  T
Q  859 tg 860  Q
    ||    
T  8793301 tg 8793302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 759 - 860
Target Start/End: Complemental strand, 32947722 - 32947621
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||||||||| ||  | ||| ||||||||| ||| ||| ||||| |  | ||||||||||||||||||||||||||||||||||| |||    
T  32947722 ataaactcacacacataaagtggagatgtcggggttcgaactccggtcaagacgttcggcctaacaattttaacatttttgtcagttgagctaggactta 32947623  T
Q  859 tg 860  Q
    ||    
T  32947622 tg 32947621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 759 - 866
Target Start/End: Original strand, 44836144 - 44836251
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||| ||||||| ||  || || ||||||||| |||||||||||||||  | |||||||||| | ||||||| |||||| ||||||| |||    
T  44836144 ataaactcacacatataaagtggagataccggggttcgaaccccgatcatgacgtccgacctaacaattttgatatttttgccagttgtgctaggactta 44836243  T
Q  859 tgggacta 866  Q
    ||||||||    
T  44836244 tgggacta 44836251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 745 - 851
Target Start/End: Complemental strand, 50905550 - 50905444
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagt 844  Q
    |||||||| | || ||||||||||||||| |||||||| ||| |||||||||||| || ||||||| ||    | ||||||||||||||||||| |||||    
T  50905550 atgacaaagtcattataaactcacacacacaaagtagaggtaccgaggttcgaactccaatcatgatgtttggcctaacaattttaacatttttatcagt 50905451  T
Q  845 tgagcta 851  Q
    |||||||    
T  50905450 tgagcta 50905444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 759 - 854
Target Start/End: Complemental strand, 15104145 - 15104052
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    |||||||||||||||||| ||||| |||||| ||||||||| ||||||||||| |||  | ||||||||||  || ||||||||||||||||||||    
T  15104145 ataaactcacacacataa-gtagaggtatcggggttcgaaccccgatcatgacatccggcctaacaattttggca-ttttgtcagttgagctagga 15104052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 745 - 853
Target Start/End: Original strand, 49773466 - 49773574
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagt 844  Q
    |||||||| |||| ||||||| ||||||| |||||||| |||||| ||||||||| | | | ||||||| |  | ||||||||| ||||||||||| | |    
T  49773466 atgacaaagttatcataaacttacacacacaaagtagaggtatcggggttcgaactctggttatgacgttcggcctaacaatttcaacatttttgttaat 49773565  T
Q  845 tgagctagg 853  Q
    |||||||||    
T  49773566 tgagctagg 49773574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 761 - 864
Target Start/End: Original strand, 37315082 - 37315185
Alignment:
Q  761 aaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatg 860  Q
    ||||||||||||| ||||| || ||  |||||||||||| | |||||||||||||| | |||||||||   ||||||||||| | ||||||||| | |||    
T  37315082 aaactcacacacacaaagtggaggttccgaggttcgaactcggatcatgacgtccagcctaacaatttcggcatttttgtcattcgagctaggactcatg 37315181  T
Q  861 ggac 864  Q
    ||||    
T  37315182 ggac 37315185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 759 - 864
Target Start/End: Original strand, 7204534 - 7204639
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||| ||| ||||| || |||||| ||||||||| ||| |||||| || |  | |||||||||   |||||||| |||||||||||||| |||    
T  7204534 ataaactcacatacacaaagtggaggtatcggggttcgaaccccggtcatgatgttcggcctaacaatttcggcatttttgccagttgagctaggactta 7204633  T
Q  859 tgggac 864  Q
    ||||||    
T  7204634 tgggac 7204639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 759 - 854
Target Start/End: Original strand, 40962729 - 40962822
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    |||||||||||||||||| || || |||||| ||||||||| ||||||||| | |||| | ||| ||||||  |||||| ||||||||||||||||    
T  40962729 ataaactcacacacataa-gtggaggtatcggggttcgaaccccgatcatggcatccagcctaataattttggcatttt-gtcagttgagctagga 40962822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 768 - 854
Target Start/End: Complemental strand, 236663 - 236577
Alignment:
Q  768 cacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    ||||||||||||  | ||| || ||||||||| ||| |||||||||||  | |||||||||  |||||||||||||||||| |||||    
T  236663 cacacataaagtgaaggtaccggggttcgaaccccggtcatgacgtccggcctaacaatttcgacatttttgtcagttgaggtagga 236577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 756 - 866
Target Start/End: Original strand, 4627987 - 4628097
Alignment:
Q  756 ataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggat 855  Q
    |||||||| |||||||||||||||  | ||| ||  |||| |||  |||| ||||||||   | ||||||||| | |||||||||||||||||||||||     
T  4627987 ataataaattcacacacataaagtgaaggtaccggagttcaaacctcgattatgacgtctggcctaacaatttcagcatttttgtcagttgagctaggac 4628086  T
Q  856 ttatgggacta 866  Q
    ||||| |||||    
T  4628087 ttatgagacta 4628097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 759 - 865
Target Start/End: Complemental strand, 27868380 - 27868274
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| ||||| || ||| ||||||| |||| |||  || |||||||  | |||||||||    |||||||||||||||||||||| |||    
T  27868380 ataaactcacacacacaaagtggaagtaccgaggtttgaaccccggccaagacgtccggcctaacaatttcggtatttttgtcagttgagctaggagtta 27868281  T
Q  859 tgggact 865  Q
    || ||||    
T  27868280 tgagact 27868274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 702
Target Start/End: Original strand, 665866 - 665927
Alignment:
Q  641 tcggttggactcttaatctcacttgtttgatgaacttcttggttaatttgctattaaataat 702  Q
    |||||| ||||||||||||||||  ||||||||  ||| |||| ||||||||||||||||||    
T  665866 tcggttagactcttaatctcactaatttgatgagtttcatggtcaatttgctattaaataat 665927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 734 - 809
Target Start/End: Complemental strand, 11403295 - 11403221
Alignment:
Q  734 agatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatg 809  Q
    |||| ||||||||||||||  ||| ||||||||||||||| ||| | |||||| || ||||||||| |||||||||    
T  11403295 agatagaagaaatgacaaagctattataaactcacacacacaaa-tggatgtaccggggttcgaaccccgatcatg 11403221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 742 - 828
Target Start/End: Complemental strand, 41651192 - 41651106
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattt 828  Q
    |||||||||||   || ||||||||||||||||||| |  | ||| || | ||||||| |||||||||||||||| | |||||||||    
T  41651192 gaaatgacaaaaccattataaactcacacacataaaatgaaggtaccgggattcgaaccccgatcatgacgtccaacctaacaattt 41651106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 759 - 860
Target Start/End: Original strand, 8312554 - 8312655
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    |||||||||| |||| ||||| || ||| || |||||||||  ||||||| |||| |  | |||||||||  ||||||||||| ||||| |||||| |||    
T  8312554 ataaactcactcacacaaagtggaggtaccggggttcgaacctcgatcataacgttcggcctaacaatttcgacatttttgtccgttgaactaggactta 8312653  T
Q  859 tg 860  Q
    ||    
T  8312654 tg 8312655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 763 - 848
Target Start/End: Original strand, 11080991 - 11081076
Alignment:
Q  763 actcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgag 848  Q
    ||||| ||||||||||| || |||||| |||| |||| ||| |||| ||||||  | || |||||| |||||||||| ||||||||    
T  11080991 actcatacacataaagtggaggtatcggggtttgaaccccggtcataacgtccggcctagcaatttcaacatttttgccagttgag 11081076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 759 - 864
Target Start/End: Complemental strand, 13117028 - 13116923
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| |||||  | ||| ||  ||||||||   | |||||||||||| | |||||||||  |||||||||| ||||||| |||||  ||    
T  13117028 ataaactcacacacacaaagtgaaggtaccggagttcgaaccttggtcatgacgtccagcctaacaatttcgacatttttgttagttgaggtaggacata 13116929  T
Q  859 tgggac 864  Q
    ||||||    
T  13116928 tgggac 13116923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 743 - 828
Target Start/End: Original strand, 23809895 - 23809979
Alignment:
Q  743 aaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattt 828  Q
    |||||||||| | || |||||||||||||||| |||| || ||||||  |||||||| ||||||||||| |||  | |||||||||    
T  23809895 aaatgacaaagtcattataaactcacacacat-aagtggaggtatcggagttcgaactccgatcatgacatccggcctaacaattt 23809979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 861
Target Start/End: Complemental strand, 49632687 - 49632555
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatt 827  Q
    ||||| |||| || ||||||| ||| | || |||||||||||||||  |||| || |||||| |||||||||  || ||||||| |||| | ||||||||    
T  49632687 ttttttagatagacgaaatgataaaatcattataaactcacacaca-caagtggaggtatcggggttcgaacctcggtcatgacatccagcctaacaatt 49632589  T
Q  828 ttaacatttttgtcagttgagctaggatttatgg 861  Q
    |   |||||||  ||||||| |||||| ||||||    
T  49632588 tcggcatttttaccagttgaactaggacttatgg 49632555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 759 - 865
Target Start/End: Complemental strand, 12321089 - 12320983
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    |||||||||||| || |||||||| |||||| ||||||||| | | || |||||| |  | |||||||||| |||||||||||||||||||||||| |||    
T  12321089 ataaactcacacgcacaaagtagaggtatcggggttcgaactctggtcgtgacgttcggcctaacaattttgacatttttgtcagttgagctaggactta 12320990  T
Q  859 tgggact 865  Q
    || ||||    
T  12320989 tgagact 12320983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 728 - 864
Target Start/End: Original strand, 33128160 - 33128296
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatt 827  Q
    ||||| |||| || || |||||||||  |||||||||||||| ||| ||||| || ||| || ||||||||| ||||||||||||| |  | ||||||||    
T  33128160 ttttttagatagatgagatgacaaatgcataataaactcacatacacaaagtggaggtaccggggttcgaaccccgatcatgacgttcggcctaacaatt 33128259  T
Q  828 ttaacatttttgtcagttgagctaggatttatgggac 864  Q
    | | ||||||||  |||||||||| || |||||||||    
T  33128260 tcagcatttttgctagttgagctatgacttatgggac 33128296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 759 - 866
Target Start/End: Complemental strand, 40418230 - 40418123
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||||||||| || |||||| ||||||||| ||| ||||||||||   | ||||||||| | |||||||  |||||||||||| | |||    
T  40418230 ataaactcacacacataaagtggaggtatcggggttcgaactccggtcatgacgtctggcctaacaatttcagcatttttaccagttgagctagaactta 40418131  T
Q  859 tgggacta 866  Q
    || |||||    
T  40418130 tgagacta 40418123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 762 - 866
Target Start/End: Complemental strand, 1522792 - 1522688
Alignment:
Q  762 aactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatgg 861  Q
    ||||||||||| |||||| || |||| ||||||||||| |||||||||| ||||  | |||||||||    ||||||| |||||||||||||| |||||     
T  1522792 aactcacacacgtaaagtggaggtatggaggttcgaaccccgatcatgaagtccggcctaacaatttcggtatttttgccagttgagctaggacttatga 1522693  T
Q  862 gacta 866  Q
    |||||    
T  1522692 gacta 1522688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 745 - 851
Target Start/End: Original strand, 11109869 - 11109975
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagt 844  Q
    |||||||| | || ||||||| ||||||||||||| ||  || || ||||||||| ||  |||||||||||| ||||||||||||  |||||||  | ||    
T  11109869 atgacaaaatcatcataaactaacacacataaagtggagataccggggttcgaaccccagtcatgacgtccagcttaacaattttggcatttttaccggt 11109968  T
Q  845 tgagcta 851  Q
    |||||||    
T  11109969 tgagcta 11109975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 792 - 866
Target Start/End: Original strand, 41323694 - 41323768
Alignment:
Q  792 gttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatgggacta 866  Q
    |||||||| ||||||| |||||||  | ||||||||||||||||||| | |||||||||| || |||| ||||||    
T  41323694 gttcgaaccccgatcacgacgtccggcctaacaattttaacatttttatgagttgagctaagacttataggacta 41323768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 803 - 860
Target Start/End: Original strand, 12631927 - 12631984
Alignment:
Q  803 gatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatg 860  Q
    |||||| |||| || ||||||||||| ||||||||||||| ||||| |||||||||||    
T  12631927 gatcatcacgttcagcttaacaatttcaacatttttgtcaattgagttaggatttatg 12631984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 828
Target Start/End: Original strand, 31941061 - 31941129
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattt 828  Q
    |||||||||||||||||| || || |||||| ||||||||| ||||||||||| |||| | |||||||||    
T  31941061 ataaactcacacacataa-gtggaggtatcggggttcgaaccccgatcatgacatccagcctaacaattt 31941129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 742 - 854
Target Start/End: Original strand, 2508144 - 2508254
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtc 841  Q
    |||||||||||  ||| |||||||||||||||  ||||||| ||||||  |||||||| ||| ||||||| ||| || ||||||||||  || ||||||     
T  2508144 gaaatgacaaagctattataaactcacacaca-caagtagaggtatcggagttcgaaccccggtcatgacatccgtcctaacaattttggca-ttttgtt 2508241  T
Q  842 agttgagctagga 854  Q
    ||||||| |||||    
T  2508242 agttgagttagga 2508254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 792 - 860
Target Start/End: Complemental strand, 31291288 - 31291220
Alignment:
Q  792 gttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatg 860  Q
    |||||||| ||||||||||||| |  | |||||||||   |||||||||||||| ||||||||||||||    
T  31291288 gttcgaaccccgatcatgacgttcggcctaacaatttcggcatttttgtcagttaagctaggatttatg 31291220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 759 - 859
Target Start/End: Complemental strand, 32778600 - 32778500
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    |||||| |||||||| ||||| || ||||||  |||| ||| ||||||||||||| |  ||||| |||||| ||||||||| || || |||||||| |||    
T  32778600 ataaacccacacacacaaagtggaggtatcggagttcaaaccccgatcatgacgtacgacttaataattttgacatttttgccacttaagctaggactta 32778501  T
Q  859 t 859  Q
    |    
T  32778500 t 32778500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 776 - 854
Target Start/End: Original strand, 25899225 - 25899303
Alignment:
Q  776 aagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    ||||||| ||| |||||||| ||| ||| |||||||||||  | |||||||||   ||||||||||||||||| |||||    
T  25899225 aagtagaggtaccgaggttcaaaccccggtcatgacgtccggcctaacaatttcggcatttttgtcagttgagttagga 25899303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 739 - 860
Target Start/End: Complemental strand, 13849478 - 13849357
Alignment:
Q  739 gaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacattttt 838  Q
    ||||||||| |||| | |||| |||||| |||||| ||||| || || ||| ||||||||| ||||||| ||||||   | |||||||||  ||||||||    
T  13849478 gaagaaatggcaaagtcataacaaactcccacacacaaagtggaggtgtcggggttcgaaccccgatcaagacgtctgacctaacaatttcgacattttt 13849379  T
Q  839 gtcagttgagctaggatttatg 860  Q
    |||||||||||||||| |||||    
T  13849378 gtcagttgagctaggacttatg 13849357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 734 - 865
Target Start/End: Complemental strand, 37759556 - 37759424
Alignment:
Q  734 agatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaa-caccgatcatgacgtccatcttaacaattttaac 832  Q
    |||| ||||| ||||||||   || ||||||||||||||| ||||| || | ||||||||||||| | |||||||||||||||    ||||||||| | |    
T  37759556 agatagaagagatgacaaagccatcataaactcacacacacaaagtggaggaatcgaggttcgaacccccgatcatgacgtccggtctaacaatttcagc 37759457  T
Q  833 atttttgtcagttgagctaggatttatgggact 865  Q
    ||||||| ||||||||||| || ||||| ||||    
T  37759456 atttttgccagttgagctatgacttatgagact 37759424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 759 - 865
Target Start/End: Complemental strand, 24870699 - 24870593
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    |||||||||||||| |||||| || ||| ||||||||||||  || |||| ||||||  | |||||||||   |||||||| |||||||||||||| |||    
T  24870699 ataaactcacacacgtaaagtggaggtaccgaggttcgaacctcggtcattacgtccggcctaacaatttcggcatttttgccagttgagctaggactta 24870600  T
Q  859 tgggact 865  Q
    || ||||    
T  24870599 tgagact 24870593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 750 - 851
Target Start/End: Original strand, 9696309 - 9696410
Alignment:
Q  750 aaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagc 849  Q
    ||||| || ||||||| ||||||||||||| || ||| |||||||||||| |||||||| |||| |  | |||||||||  ||||||||| || ||||||    
T  9696309 aaattcatcataaacttacacacataaagtggaggtaccgaggttcgaaccccgatcataacgttcgacctaacaatttcgacatttttgccaattgagc 9696408  T
Q  850 ta 851  Q
    ||    
T  9696409 ta 9696410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 749 - 864
Target Start/End: Complemental strand, 46107505 - 46107390
Alignment:
Q  749 caaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtc-catcttaacaattttaacatttttgtcagttga 847  Q
    |||||| || ||||| ||||||||||||||| || |||||| ||||||||   |||||||||||||  ||| ||| |||||| |||||||| ||||||||    
T  46107505 caaattcatcataaattcacacacataaagtggaggtatcggggttcgaatctcgatcatgacgtctgatc-taataattttgacatttttatcagttga 46107407  T
Q  848 gctaggatttatgggac 864  Q
     |||||| | |||||||    
T  46107406 actaggactgatgggac 46107390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 765 - 848
Target Start/End: Complemental strand, 22717194 - 22717111
Alignment:
Q  765 tcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgag 848  Q
    |||||||||||||||||| |||||| ||||||||| |  |||||||||| |  | |||||||||  ||||||||||| ||||||    
T  22717194 tcacacacataaagtagaggtatcggggttcgaactctaatcatgacgttcgacctaacaatttcgacatttttgtcggttgag 22717111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 745 - 844
Target Start/End: Complemental strand, 33530335 - 33530236
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagt 844  Q
    |||| ||| |||| ||||||||||||||| |||||||| |||  |||||| ||||  || |||||||||||  | ||||||||| ||||||||| |||||    
T  33530335 atgaaaaagttatcataaactcacacacacaaagtagaggtactgaggtttgaacctcggtcatgacgtccggcctaacaatttcaacatttttatcagt 33530236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 759 - 857
Target Start/End: Original strand, 579269 - 579365
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattt 857  Q
    |||||||||||||||||| || || ||| || ||||||||| ||||||||||| |||  | |||||||||  ||| |||| ||||||||||||||||||    
T  579269 ataaactcacacacataa-gtggaggtaccggggttcgaaccccgatcatgacatccggcctaacaatttcgaca-ttttatcagttgagctaggattt 579365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 728 - 810
Target Start/End: Complemental strand, 939719 - 939638
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatga 810  Q
    |||||||||| || ||||||||||| |||| |||||||||||||||| |||| || ||| || ||||||||| ||||| ||||    
T  939719 tttttaagatagacgaaatgacaaagttattataaactcacacacat-aagtggaggtaccgtggttcgaaccccgattatga 939638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 734 - 860
Target Start/End: Complemental strand, 46343456 - 46343330
Alignment:
Q  734 agatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaaca 833  Q
    |||| ||||| |||||||| | || |||||||||||||| |||| | || |||    ||||||||| ||| |||||||||||  | |||||||||   ||    
T  46343456 agatagaagagatgacaaagtcatcataaactcacacacgtaaaatggaggtactagggttcgaaccccggtcatgacgtccggcctaacaatttcggca 46343357  T
Q  834 tttttgtcagttgagctaggatttatg 860  Q
     |||||||||||||||||||| |||||    
T  46343356 cttttgtcagttgagctaggacttatg 46343330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 759 - 861
Target Start/End: Complemental strand, 48391791 - 48391689
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||| | ||| |||| |||  | ||||||||| ||  |||||||||||| | |||||||||| | ||||||  |||||||| |||||||||    
T  48391791 ataaactcacacatacaaaatagaggtactggggttcgaaccccagtcatgacgtccagcctaacaattttgatatttttaccagttgagttaggattta 48391692  T
Q  859 tgg 861  Q
    |||    
T  48391691 tgg 48391689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 860
Target Start/End: Complemental strand, 28758479 - 28758378
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| ||||| || |||  | ||||||||| ||| |||||||||||  | ||| |||||   |||||||| ||||||| ||||||||||    
T  28758479 ataaactcacacacacaaagtggaggtactggggttcgaactccggtcatgacgtccgacctaataatttcggcatttttgccagttgaactaggattta 28758380  T
Q  859 tg 860  Q
    ||    
T  28758379 tg 28758378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 728 - 860
Target Start/End: Original strand, 37340103 - 37340234
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatt 827  Q
    ||||| |||| || || |||||||| | || ||||||||||||||| ||||| ||  || || ||||||||| | ||||||||||| |  | ||||||||    
T  37340103 ttttttagatagacgagatgacaaaatcatcataaactcacacacacaaagtggagataccgtggttcgaac-ctgatcatgacgttcggcctaacaatt 37340201  T
Q  828 ttaacatttttgtcagttgagctaggatttatg 860  Q
    |  |||||||| |||||||| |||||| |||||    
T  37340202 tcgacatttttatcagttgaactaggacttatg 37340234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 765 - 848
Target Start/End: Original strand, 22988023 - 22988106
Alignment:
Q  765 tcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgag 848  Q
    |||||||||||||||||| |||||| ||||||||| |   ||||||||| |  | |||||||||  ||||||||||| ||||||    
T  22988023 tcacacacataaagtagaggtatcggggttcgaactctagtcatgacgttcgacctaacaatttcgacatttttgtcggttgag 22988106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 791 - 860
Target Start/End: Complemental strand, 38882788 - 38882718
Alignment:
Q  791 ggttcgaacaccgatcatgacgtccatcttaacaattttaaca-tttttgtcagttgagctaggatttatg 860  Q
    ||||||||| ||| |||||||||||| | |||||||||  ||| |||||| |||||||||||||| |||||    
T  38882788 ggttcgaactccggtcatgacgtccagcctaacaatttcgacattttttgccagttgagctaggagttatg 38882718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 728 - 778
Target Start/End: Complemental strand, 39585462 - 39585412
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaag 778  Q
    ||||| |||| ||||| |||||||| |||| ||||||||||||||||||||    
T  39585462 ttttttagatagaagagatgacaaagttatcataaactcacacacataaag 39585412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 788 - 837
Target Start/End: Original strand, 40610677 - 40610726
Alignment:
Q  788 cgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttt 837  Q
    |||||||||||| |||||||||||||||| | |||||||||  |||||||    
T  40610677 cgaggttcgaactccgatcatgacgtccagcctaacaatttcgacatttt 40610726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 759 - 852
Target Start/End: Original strand, 41293087 - 41293180
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctag 852  Q
    ||||| || ||||||||||||  | ||||||  |||||||  ||||||||||| ||   | |||||||||  ||||||||||||||||||||||    
T  41293087 ataaattctcacacataaagtgaaagtatcggagttcgaattccgatcatgacatcaggcataacaatttcgacatttttgtcagttgagctag 41293180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 728 - 864
Target Start/End: Complemental strand, 22215 - 22080
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatt 827  Q
    ||||| |||| || || |||||||| | || ||||||||||||||| ||||| || |||||| ||||||||| |||||||||||||||  | || |||||    
T  22215 ttttttagatagacgagatgacaaagtcatcataaactcacacacacaaagtggaggtatcggggttcgaaccccgatcatgacgtccggc-tatcaatt 22117  T
Q  828 ttaacatttttgtcagttgagctaggatttatgggac 864  Q
    || |||||||| | ||||||| || || |||||||||    
T  22116 ttgacatttttattagttgagttaagacttatgggac 22080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 745 - 864
Target Start/End: Original strand, 41215247 - 41215366
Alignment:
Q  745 atgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagt 844  Q
    ||||||||  ||| ||||||||| | ||||||||| || |||||| ||||| ||| |||||||||||||||   |||||||||| | |||||||  | ||    
T  41215247 atgacaaaactatcataaactcatatacataaagtggaggtatcggggttcaaaccccgatcatgacgtccgatttaacaatttcagcatttttacctgt 41215346  T
Q  845 tgagctaggatttatgggac 864  Q
    |||||||||| |||||||||    
T  41215347 tgagctaggacttatgggac 41215366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 739 - 865
Target Start/End: Original strand, 22792116 - 22792242
Alignment:
Q  739 gaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacattttt 838  Q
    ||||||||| |||| | || ||||||||||||||| ||||| || || ||| ||||||||| ||  ||| |||||||  | |||||||||   |||||||    
T  22792116 gaagaaatggcaaaatcatcataaactcacacacacaaagtggaggtgtcggggttcgaacccctgtcaagacgtccgacctaacaatttcggcattttt 22792215  T
Q  839 gtcagttgagctaggatttatgggact 865  Q
    | |||||||||||||| || |||||||    
T  22792216 gccagttgagctaggacttgtgggact 22792242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 1682681 - 1682561
Alignment:
Q  208 atatcaaatggtatctgattaatatcaaattttatagacatgaattatgtaataatagctttcagtctagtcgtggattttataatgcagttatgtgata 307  Q
    |||||||||||||||  ||||| || ||||||| |||||||||  ||||| ||||||||||||| || |   ||| ||||| ||||||| ||||||||||    
T  1682681 atatcaaatggtatccaattaacattaaattttgtagacatgatctatgtgataatagctttcaatcaaacggtgaatttt-taatgcaattatgtgata 1682583  T
Q  308 acgaattatcaaaggtgtcata 329  Q
    | ||||||| |||  |||||||    
T  1682582 aagaattataaaaaatgtcata 1682561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 739 - 860
Target Start/End: Complemental strand, 9599434 - 9599313
Alignment:
Q  739 gaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacattttt 838  Q
    ||||||||| |||| | || |||| |||||||||| ||||| || ||| |   ||| |||| ||||||| ||||||    ||||||||||  ||||||||    
T  9599434 gaagaaatggcaaagtcatcataagctcacacacacaaagtggaggtaccagagtttgaaccccgatcaagacgtctggtttaacaatttcgacattttt 9599335  T
Q  839 gtcagttgagctaggatttatg 860  Q
    |||||||||||||||| |||||    
T  9599334 gtcagttgagctaggaattatg 9599313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 742 - 851
Target Start/End: Complemental strand, 17080583 - 17080476
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtc 841  Q
    ||||||||||| | || ||||| |||||||||| |||| || ||| |||||||||||| ||  ||||||| |||  |||||||||||  ||| |||||||    
T  17080583 gaaatgacaaaatcattataaattcacacacat-aagtggaggtaccgaggttcgaacccccgtcatgacatccgacttaacaatttcgaca-ttttgtc 17080486  T
Q  842 agttgagcta 851  Q
    ||||||||||    
T  17080485 agttgagcta 17080476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 854
Target Start/End: Complemental strand, 1612474 - 1612380
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    ||||||||||||||| || || || |||||| |||||||||  || | |||| ||||  | ||||||||| |||||||||||||||||||| ||||    
T  1612474 ataaactcacacacacaa-gtggaggtatcggggttcgaaccgcggttatgatgtccggcctaacaatttcaacatttttgtcagttgagcaagga 1612380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 742 - 853
Target Start/End: Complemental strand, 43237927 - 43237817
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtc 841  Q
    |||||||||||   || ||||||||||||| | |||||||| ||| || ||||| |||  || |||||||||||| | |||||||||| ||||||||       
T  43237927 gaaatgacaaagacatgataaactcacacatacaaagtagaggtaccggggttcaaacctcggtcatgacgtccagc-taacaattttgacatttttact 43237829  T
Q  842 agttgagctagg 853  Q
    ||||||||||||    
T  43237828 agttgagctagg 43237817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 1682750 - 1682812
Alignment:
Q  203 ttaatatatcaaatggtatctgattaatatcaaattttatagacatgaattatgtaataatag 265  Q
    ||||||||||||||| |||||||| || |||||||||| ||  ||||| |||| |||||||||    
T  1682750 ttaatatatcaaatgatatctgatcaacatcaaattttgtaagcatgatttatttaataatag 1682812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 759 - 857
Target Start/End: Complemental strand, 8487498 - 8487402
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattt 857  Q
    ||||||||||||||| || || || ||| |||| ||| ||| ||| ||||||| |||| ||||||||||||  |||||| | |||||||||||||||||    
T  8487498 ataaactcacacacacaa-gtggaggtaccgagattcaaaccccggtcatgacatccagcttaacaattttggcatttt-gccagttgagctaggattt 8487402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 759 - 864
Target Start/End: Complemental strand, 11408475 - 11408370
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtcc-atcttaacaattttaacatttttgtcagttgagctaggattt 857  Q
    ||||||||||||||| |||||  | |||  | | ||||||| ||||| ||||||| | |||| ||||||||| |||||||||  ||||||||||||| ||    
T  11408475 ataaactcacacacacaaagtgaaggtactgggattcgaactccgattatgacgttcgatct-aacaattttgacatttttgctagttgagctaggactt 11408377  T
Q  858 atgggac 864  Q
    |||||||    
T  11408376 atgggac 11408370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 739 - 808
Target Start/End: Complemental strand, 6525961 - 6525892
Alignment:
Q  739 gaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcat 808  Q
    ||||| |||||||| | || ||||||||||||||| ||||| || |||| | ||||||||| ||||||||    
T  6525961 gaagagatgacaaagtcatcataaactcacacacacaaagtggaggtattggggttcgaaccccgatcat 6525892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 804 - 861
Target Start/End: Complemental strand, 24406620 - 24406563
Alignment:
Q  804 atcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatgg 861  Q
    ||||||||||||  | ||| ||||||| |||||||||||||||||||| || ||||||    
T  24406620 atcatgacgtccggcctaataattttagcatttttgtcagttgagctatgacttatgg 24406563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 739 - 860
Target Start/End: Complemental strand, 26526635 - 26526514
Alignment:
Q  739 gaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacattttt 838  Q
    ||||| ||| |||||| || ||||||||||||||||||||| || ||| ||  ||||||||  || ||||||||| |  | |||||||||    ||||||    
T  26526635 gaagagatggcaaattcatcataaactcacacacataaagtggaggtaccggagttcgaacctcggtcatgacgttcggcctaacaatttcggtattttt 26526536  T
Q  839 gtcagttgagctaggatttatg 860  Q
    | ||||||||||| || |||||    
T  26526535 gccagttgagctaagacttatg 26526514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 271
Target Start/End: Complemental strand, 34835345 - 34835284
Alignment:
Q  210 atcaaatggtatctgattaatatcaaattttatagacatgaattatgtaataatagctttca 271  Q
    |||||||| |||| |||||||||||||||||||| ||| ||  ||||| || ||||||||||    
T  34835345 atcaaatgatatccgattaatatcaaattttataaacaagatctatgtgatgatagctttca 34835284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 728 - 861
Target Start/End: Complemental strand, 18055991 - 18055859
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatt 827  Q
    ||||| |||| || ||||||||||| | || ||||||||||||||| ||| | || ||| || ||||||||| ||||||||||| |||  | || |||||    
T  18055991 ttttttagatagacgaaatgacaaagtcattataaactcacacacacaaa-tggaggtaacgcggttcgaaccccgatcatgacatccggcctagcaatt 18055893  T
Q  828 ttaacatttttgtcagttgagctaggatttatgg 861  Q
    || ||||||||| || ||||||||||| ||||||    
T  18055892 ttgacatttttgccaattgagctaggacttatgg 18055859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 728 - 863
Target Start/End: Original strand, 19954895 - 19955028
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatt 827  Q
    ||||||| || || || |||||||| | || |||||||||||||||  ||||||| |||||| ||||||||| ||||||||||| |||  ||||||||||    
T  19954895 tttttaaaatagacgagatgacaaagtcatcataaactcacacaca--aagtagaggtatcggggttcgaactccgatcatgacatccgacttaacaatt 19954992  T
Q  828 ttaacatttttgtcagttgagctaggatttatggga 863  Q
    |  |||| ||  | ||||||||| |||||| |||||    
T  19954993 tcgacatattctttagttgagctgggatttgtggga 19955028  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 759 - 854
Target Start/End: Original strand, 32517844 - 32517939
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    ||||||||||||||| ||||| || ||| || |||||||||  || |||||||||||| | |||||||||  |||||||| |||||||| ||||||    
T  32517844 ataaactcacacacacaaagtggaggtaccggggttcgaacctcggtcatgacgtccagcctaacaatttcgacatttttatcagttgaactagga 32517939  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 742 - 864
Target Start/End: Complemental strand, 9993289 - 9993167
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtc 841  Q
    ||||||||||| | ||  ||||||||||  || ||||| || |||  | ||||||||| ||||| |||||||||  |||||||||||  |||||||||||    
T  9993289 gaaatgacaaagtcatcgtaaactcacatgcacaaagttgaggtactggggttcgaaccccgattatgacgtccggcttaacaatttcgacatttttgtc 9993190  T
Q  842 agttgagctaggatttatgggac 864  Q
    ||||||||||  | |||||||||    
T  9993189 agttgagctataacttatgggac 9993167  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 759 - 860
Target Start/End: Complemental strand, 13491128 - 13491027
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| ||||| || |||| ||||||||||| ||| |||||||||||  | |||||||||    ||||||| ||||||||||| || |||    
T  13491128 ataaactcacacacacaaagtggaggtattgaggttcgaaccccggtcatgacgtccggcataacaatttcggtatttttgccagttgagctatgactta 13491029  T
Q  859 tg 860  Q
    ||    
T  13491028 tg 13491027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 759 - 864
Target Start/End: Complemental strand, 22999177 - 22999072
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||||||||||||| ||||| || || ||| ||||||||| ||| |||||||||||    ||||||||||  |||||||  | |||||||||||| |||    
T  22999177 ataaactcacacacacaaagtggaggtgtcggggttcgaaccccggtcatgacgtccggactaacaattttggcatttttacccgttgagctaggactta 22999078  T
Q  859 tgggac 864  Q
    ||||||    
T  22999077 tgggac 22999072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 854
Target Start/End: Complemental strand, 39417544 - 39417450
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    ||||||||||||||||||||| ||  |||||  |||||||| ||| ||||||| |||  | |||||||||    ||||||||||||||||||||||    
T  39417544 ataaactcacacacataaagtggagatatcggagttcgaaccccg-tcatgacatccggcctaacaatttcggtatttttgtcagttgagctagga 39417450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 854
Target Start/End: Original strand, 42200889 - 42200982
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctagga 854  Q
    ||||||||||||||| || || || ||| |||||||||||| ||||||||||| |||  | ||||||||||  || ||||| ||||||||||||||    
T  42200889 ataaactcacacacacaa-gtggaggtaccgaggttcgaaccccgatcatgacatccggcctaacaattttggca-ttttgccagttgagctagga 42200982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 742 - 828
Target Start/End: Original strand, 36685413 - 36685498
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattt 828  Q
    ||||||||||| |||| |||||||||||||||  |||| || |||||  ||||||||| ||||||||||| |||  | |||||||||    
T  36685413 gaaatgacaaagttattataaactcacacaca-caagtggaggtatcagggttcgaaccccgatcatgacatccggcctaacaattt 36685498  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 759 - 861
Target Start/End: Complemental strand, 37103424 - 37103322
Alignment:
Q  759 ataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggattta 858  Q
    ||||| ||||||||| |||   || |||||| ||||| ||| ||| |||||| ||||    |||||||||  |||||||||||||||||||||||| |||    
T  37103424 ataaattcacacacacaaaacggaggtatcggggttcaaaccccggtcatgatgtccggtctaacaatttcgacatttttgtcagttgagctaggactta 37103325  T
Q  859 tgg 861  Q
    |||    
T  37103324 tgg 37103322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 734 - 854
Target Start/End: Original strand, 21840451 - 21840568
Alignment:
Q  734 agatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaaca 833  Q
    |||| ||||||||| ||||   || |||||||||| |||| || || || |||||| | ||||||| ||||||||||  |||| |||||||||||  |||    
T  21840451 agatagaagaaatggcaaagccattataaactcacccacacaa-gtggaggtatcgggattcgaaccccgatcatgatatccaacttaacaatttcgaca 21840549  T
Q  834 tttttgtcagttgagctagga 854  Q
      |||||||||||||||||||    
T  21840550 --tttgtcagttgagctagga 21840568  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 784 - 861
Target Start/End: Complemental strand, 44765301 - 44765225
Alignment:
Q  784 gtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatgg 861  Q
    |||||| ||||||||| ||||||||||| |||| | |||||||||  ||| |||| ||||||||| || |||||||||    
T  44765301 gtatcggggttcgaaccccgatcatgacatccaacctaacaatttcgaca-ttttatcagttgagataagatttatgg 44765225  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 784 - 860
Target Start/End: Original strand, 19364 - 19440
Alignment:
Q  784 gtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttatg 860  Q
    |||||| ||||||||| || ||||||||||||  | ||||||||| |||||||||| ||||||| |||||| |||||    
T  19364 gtatcggggttcgaaccccaatcatgacgtccggcctaacaatttcaacatttttgccagttgaactaggacttatg 19440  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 760 - 864
Target Start/End: Complemental strand, 2747651 - 2747547
Alignment:
Q  760 taaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattttaacatttttgtcagttgagctaggatttat 859  Q
    |||||||||||||||||| | || |||||  | ||||||  |||||||||||||    | |||||||||| |||||||||||||  ||||||||| ||||    
T  2747651 taaactcacacacataaaatggaagtatcaggattcgaatcccgatcatgacgtttggcctaacaattttgacatttttgtcaggcgagctaggacttat 2747552  T
Q  860 gggac 864  Q
    |||||    
T  2747551 gggac 2747547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 728 - 854
Target Start/End: Complemental strand, 9727627 - 9727502
Alignment:
Q  728 tttttaagatcgaagaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaatt 827  Q
    ||||| |||| || ||||||||||| | || ||||||||||||||| || || || |||  | ||||||||| |||||||||   |||  | ||||||||    
T  9727627 ttttttagatagacgaaatgacaaagtcattataaactcacacacacaa-gtggaggtacaggggttcgaaccccgatcatggtatccggcctaacaatt 9727529  T
Q  828 ttaacatttttgtcagttgagctagga 854  Q
    |  ||||||||||||||||| ||||||    
T  9727528 tcgacatttttgtcagttgaactagga 9727502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 742 - 828
Target Start/End: Original strand, 3804 - 3890
Alignment:
Q  742 gaaatgacaaatttataataaactcacacacataaagtagatgtatcgaggttcgaacaccgatcatgacgtccatcttaacaattt 828  Q
    |||||||||||   || ||||||||||||||||||| |  | ||| || | ||||||| |||||||||||||||| | |||||||||    
T  3804 gaaatgacaaaaccattataaactcacacacataaaatgaaggtaccgggattcgaaccccgatcatgacgtccaacctaacaattt 3890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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