View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11228_low_11 (Length: 322)
Name: NF11228_low_11
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 30411516 - 30411221
Alignment:
| Q |
17 |
attaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatcagaattctcatctgtcataatctatttaattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411516 |
attaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatcagaattctcatctgtcataatctatttaattt |
30411417 |
T |
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| Q |
117 |
gctaaagaaaataagtttcataaacttcaaaatgaaataataaaatgacactcaccaaccattcattctgtcccagttggctgctttctttgataaacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411416 |
gctaaagaaaataagtttcataaacttcaaaatgaaataataaaatgacactcaccaaccattcattctgtcccagttggctgctttctttgataaacat |
30411317 |
T |
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| Q |
217 |
cttaacagcaacaacataaccagtaccttgtttagtaggagctagcttgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30411316 |
cttaacagcaacaacataaccagtaccttgtttagtaggagctagcgtgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatc |
30411221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 163 - 312
Target Start/End: Complemental strand, 30408443 - 30408297
Alignment:
| Q |
163 |
gacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatcttaacagcaacaacataaccagtaccttgtttagtaggagctagc |
262 |
Q |
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||||||||||||||||||| | ||| || ||| ||||||| ||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||| || |
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| T |
30408443 |
gacactcaccaaccattcactatgttcc---tggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgc |
30408347 |
T |
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| Q |
263 |
ttgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatc |
312 |
Q |
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| T |
30408346 |
atgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatc |
30408297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 30421487 - 30421342
Alignment:
| Q |
157 |
taaaatgacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatcttaacagcaacaacataaccagtaccttgtttagtagga |
256 |
Q |
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|||||||| |||||||||||||||| | |||||| || |||||||||| | ||| | |||| ||||||| |||| ||||||||||| ||||||||||| |
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| T |
30421487 |
taaaatgagactcaccaaccattcactatgtccc---tgactgctttcttggttaagcctcttgacagcaataacaaaaccagtacctggtttagtagga |
30421391 |
T |
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| Q |
257 |
gctagcttgtgctcatcgatccaccccttaaagacactaccaaacccac |
305 |
Q |
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||||| |||||||||||||||| |||||||| |||| |||||| |||| |
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| T |
30421390 |
gctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccac |
30421342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 30408617 - 30408549
Alignment:
| Q |
17 |
attaggatgatgcagctgcccaagataattgatttctgcctaaaatataaggtttaattagtctcatca |
85 |
Q |
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|||||||||| ||||||||||||| |||||||||| ||||| || || |||||||||||| |||||||| |
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| T |
30408617 |
attaggatgacgcagctgcccaaggtaattgatttttgcctgaagtacaaggtttaattattctcatca |
30408549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 30404555 - 30404484
Alignment:
| Q |
234 |
aaccagtaccttgtttagtaggagctagcttgtgctcatcgatccaccccttaaagacactaccaaacccac |
305 |
Q |
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||||||||||||||||||| || ||||| |||||||||||||||| |||||||| |||| |||||| |||| |
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| T |
30404555 |
aaccagtaccttgtttagtcggggctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccac |
30404484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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