View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11228_low_12 (Length: 310)

Name: NF11228_low_12
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11228_low_12
NF11228_low_12
[»] chr1 (6 HSPs)
chr1 (1-299)||(46766358-46766659)
chr1 (34-113)||(4868430-4868511)
chr1 (63-118)||(29045902-29045957)
chr1 (33-130)||(32515398-32515498)
chr1 (63-130)||(4549531-4549599)
chr1 (63-127)||(30259476-30259540)
[»] chr3 (3 HSPs)
chr3 (33-140)||(37273137-37273247)
chr3 (63-139)||(21574494-21574570)
chr3 (62-129)||(36200110-36200177)
[»] chr2 (4 HSPs)
chr2 (63-135)||(34652026-34652098)
chr2 (64-139)||(1939323-1939398)
chr2 (83-127)||(16867755-16867799)
chr2 (63-127)||(41809235-41809299)
[»] chr7 (3 HSPs)
chr7 (63-145)||(33645951-33646032)
chr7 (63-116)||(12234879-12234932)
chr7 (84-140)||(25596036-25596092)
[»] chr6 (7 HSPs)
chr6 (36-118)||(2460111-2460196)
chr6 (66-130)||(281841-281905)
chr6 (63-119)||(7785734-7785790)
chr6 (63-117)||(9667975-9668029)
chr6 (63-145)||(28088213-28088294)
chr6 (63-108)||(1019600-1019645)
chr6 (63-115)||(30523965-30524017)
[»] chr4 (5 HSPs)
chr4 (36-118)||(27123312-27123397)
chr4 (33-130)||(2996586-2996686)
chr4 (67-108)||(55547038-55547079)
chr4 (63-135)||(2592299-2592371)
chr4 (98-134)||(14011243-14011279)
[»] chr5 (5 HSPs)
chr5 (63-145)||(5531033-5531114)
chr5 (63-122)||(4273367-4273426)
chr5 (63-130)||(10272421-10272488)
chr5 (67-117)||(29590623-29590673)
chr5 (83-127)||(33533549-33533593)
[»] scaffold0153 (2 HSPs)
scaffold0153 (63-130)||(6484-6551)
scaffold0153 (63-130)||(13504-13571)
[»] chr8 (3 HSPs)
chr8 (63-129)||(43504765-43504831)
chr8 (64-116)||(8806759-8806811)
chr8 (69-117)||(12361218-12361266)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 46766358 - 46766659
Alignment:
Q  1 cttaaccgagcttatctattgttatca---ggctcagcacttgtgagactgcttgcgagagttataaacaacttatgacttgtctataagttgcttttaa 97  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766358 cttaaccgagcttatctattgttatcatcaggctcagcacttgtgagactgcttgcgagagttataaacaacttatgacttgtctataagttgcttttaa 46766457  T
Q  98 cttatttccattagctctccaagattgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaatttgaaaggcaacat 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766458 cttatttccattagctctccaagattgcttatgtaaaaagtttctagcgtatgcataagcacttatgccagaagcgctcaattaatttgaaaggcaacat 46766557  T
Q  198 aaacaaactatttttacagtatagtctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattgtcattagaattattc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46766558 aaacaaactatttttacagtatagtctgaaaagtcaatatctcattctcttatacattgaaagtccttttgttcttttcttattgtcattagaattattc 46766657  T
Q  298 tt 299  Q
    ||    
T  46766658 tt 46766659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 4868511 - 4868430
Alignment:
Q  34 gcacttgtgagactgcttgcgagagtt-at-aaacaacttatgacttgtctataagttgcttttaacttatttccattagct 113  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||| |||||||| ||| ||||||||| ||| ||||    
T  4868511 gcacttgtgagactgtttgagagagtttatgaaacaacttatgacatgtcaataagttgttttcaacttatttacataagct 4868430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 29045902 - 29045957
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 118  Q
    |||||||||||||| |||| |||||||||||||||| || |||||| | |||||||    
T  29045902 aaacaacttatgacatgtccataagttgcttttaacgtacttccatcatctctcca 29045957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 32515398 - 32515498
Alignment:
Q  33 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 129  Q
    |||||||||||||||| ||| ||||| ||||  ||||| | |||||| |||| |||||||| ||| ||||||| || || ||||||||| ||| ||||||    
T  32515398 agcacttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttcaacttatatctataagctctccatgatagcttat 32515497  T
Q  130 g 130  Q
    |    
T  32515498 g 32515498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 4549531 - 4549599
Alignment:
Q  63 aaacaacttatgacttgtctat-aagttgcttttaacttatttccattagctctccaagattgcttatg 130  Q
    |||||||||||||| ||||||| |||||| ||| |||  ||||| || ||||||||| |||||||||||    
T  4549531 aaacaacttatgacatgtctataaagttgttttcaacaaatttcaataagctctccaggattgcttatg 4549599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 30259476 - 30259540
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgctt 127  Q
    |||||||||| ||| |||| |||| ||| ||| ||||||||||||| ||||||||| ||| ||||    
T  30259476 aaacaacttacgacatgtcaataaattgttttcaacttatttccataagctctccatgatagctt 30259540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 37273247 - 37273137
Alignment:
Q  33 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 129  Q
    |||||| ||||||||| ||| ||||| ||||  |||||||||||||| |||| |||||||| ||| ||||||||||||| || |||||||||| ||||||    
T  37273247 agcactggtgagactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttat 37273148  T
Q  130 gtaaaaagttt 140  Q
    | ||| |||||    
T  37273147 gaaaacagttt 37273137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 21574570 - 21574494
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtt 139  Q
    |||||||||||||| |||  ||||| |||||||| ||||||||||| ||||||||| | | ||||||  ||||||||    
T  21574570 aaacaacttatgacatgttcataagctgcttttagcttatttccataagctctccatgttagcttataaaaaaagtt 21574494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 36200177 - 36200110
Alignment:
Q  62 taaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 129  Q
    ||||||||||||||| |||| |||||||| ||| | ||||||||||| |||||| || ||| ||||||    
T  36200177 taaacaacttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttat 36200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 34652026 - 34652098
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaa 135  Q
    |||||||||||||| |||| ||||| || ||| ||||||||||||| ||||||||||||| ||||||| ||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaaaa 34652098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 139
Target Start/End: Original strand, 1939323 - 1939398
Alignment:
Q  64 aacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtt 139  Q
    ||||||||||||| |||| ||||| || ||| ||||||||||||| |||||||||  || ||||||| ||| ||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaaacagtt 1939398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 16867799 - 16867755
Alignment:
Q  83 ataagttgcttttaacttatttccattagctctccaagattgctt 127  Q
    |||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  16867799 ataagttgttttcaacttatttccataagctctccaagatagctt 16867755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 41809235 - 41809299
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgctt 127  Q
    |||||||||||||| |||  |||||||| ||||| ||||||||||| |||| || ||||| ||||    
T  41809235 aaacaacttatgacatgttcataagttgtttttagcttatttccataagctttctaagatagctt 41809299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 33645951 - 33646032
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 145  Q
    |||||||||||||| ||||||||||||| |||||  |||||||||| |||||||| |||| ||||||| ||| ||||| ||||    
T  33645951 aaacaacttatgacatgtctataagttgtttttaggttatttccataagctctcc-agatagcttatgaaaacagtttatagc 33646032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 12234879 - 12234932
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctc 116  Q
    |||||||||||||| |||||||||| || ||| | ||||||||||| |||||||    
T  12234879 aaacaacttatgacatgtctataagctgttttcagcttatttccataagctctc 12234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25596092 - 25596036
Alignment:
Q  84 taagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagttt 140  Q
    ||||||| ||| ||||||||| ||| ||||||||||||| ||||||| ||| |||||    
T  25596092 taagttgttttcaacttattttcataagctctccaagatagcttatgaaaagagttt 25596036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 2460111 - 2460196
Alignment:
Q  36 acttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 118  Q
    ||||||||||||| ||| ||||| ||||  |||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||    
T  2460111 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcca 2460196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 281841 - 281905
Alignment:
Q  66 caacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 130  Q
    ||||||||||| ||||||||||||| ||| | ||||||||||| ||||||| | ||| |||||||    
T  281841 caacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagcttatg 281905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 7785734 - 7785790
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaa 119  Q
    ||||| |||||||| ||||||||||||| ||| | ||||||||||| ||||||||||    
T  7785734 aaacagcttatgacatgtctataagttgttttcagcttatttccataagctctccaa 7785790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 9667975 - 9668029
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcc 117  Q
    |||||||||||||| |||| ||||| || ||| ||||||||||||| ||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttatttccataagctctcc 9668029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 145
Target Start/End: Original strand, 28088213 - 28088294
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 145  Q
    ||||||||||| || |||||||| |||| ||| | ||||||||||| ||||||||| ||| ||||||| ||| ||||| ||||    
T  28088213 aaacaacttat-acatgtctataggttgttttgagcttatttccatgagctctccatgatagcttatgaaaacagtttatagc 28088294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 1019600 - 1019645
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccat 108  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||||    
T  1019600 aaacaacttataacatgtctataagttgtttttagcttatttccat 1019645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 30524017 - 30523965
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctct 115  Q
    |||||| ||||||| |||| || ||||||||||| ||||||||||| ||||||    
T  30524017 aaacaaattatgacatgtccattagttgcttttagcttatttccataagctct 30523965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 27123312 - 27123397
Alignment:
Q  36 acttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctcca 118  Q
    ||||||||||||| ||| ||||| ||||  |||||||||||||| ||||| ||||||| ||| ||||||||||||| |||||||||    
T  27123312 acttgtgagactgtttgagagagcttatggaaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctcca 27123397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 2996686 - 2996586
Alignment:
Q  33 agcacttgtgagactgcttgcgagag-ttat--aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 129  Q
    ||||||| |||||||| ||| ||||| ||||  |||||||||||||| |||| ||||| |  ||| ||||||||| |||  |||||||||||| ||||||    
T  2996686 agcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttat 2996587  T
Q  130 g 130  Q
    |    
T  2996586 g 2996586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 55547038 - 55547079
Alignment:
Q  67 aacttatgacttgtctataagttgcttttaacttatttccat 108  Q
    |||||||||| ||||||||||||| ||||| |||||||||||    
T  55547038 aacttatgacatgtctataagttgtttttagcttatttccat 55547079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 2592299 - 2592371
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaa 135  Q
    ||||||||||| |  ||||| ||||||| ||| | ||||||||||| |||||||||| || |||||| |||||    
T  2592299 aaacaacttataatgtgtctgtaagttgttttcagcttatttccataagctctccaaaatagcttatataaaa 2592371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 14011279 - 14011243
Alignment:
Q  98 cttatttccattagctctccaagattgcttatgtaaa 134  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  14011279 cttatttccataagctctccaagatagcttatgtaaa 14011243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 5531114 - 5531033
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatgtaaaaagtttctagc 145  Q
    |||||||||||||  |||| |||||||| ||||| ||||||||||  ||||||||| ||||||||||| || |||||| ||||    
T  5531114 aaacaacttatgatatgtccataagttgttttta-cttatttccagaagctctccaggattgcttatgaaagaagtttttagc 5531033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 4273367 - 4273426
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagat 122  Q
    ||||| |||||||||||||||||||||| ||| |||||||| | || ||||||| |||||    
T  4273367 aaacagcttatgacttgtctataagttgttttcaacttattgctataagctctcaaagat 4273426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 10272421 - 10272488
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 130  Q
    |||||||||||||| ||||| ||||||| ||| | ||||||| ||| | ||||||||||| |||||||    
T  10272421 aaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatg 10272488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 29590623 - 29590673
Alignment:
Q  67 aacttatgacttgtctataagttgcttttaacttatttccattagctctcc 117  Q
    ||||||||||||||| |||||||| ||| ||||||||||||| | ||||||    
T  29590623 aacttatgacttgtccataagttgttttcaacttatttccataaactctcc 29590673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 33533549 - 33533593
Alignment:
Q  83 ataagttgcttttaacttatttccattagctctccaagattgctt 127  Q
    |||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  33533549 ataagttgttttcaacttatttccataagctctccaagatagctt 33533593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 6484 - 6551
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 130  Q
    ||||||| |||||| ||||||||||||| ||| |  |||||||||| ||||||||  |||||||||||    
T  6484 aaacaacctatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatg 6551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 13504 - 13571
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttatg 130  Q
    ||||||| |||||| ||||||||||||| ||| |  |||||||||| ||||||||  |||||||||||    
T  13504 aaacaacctatgacatgtctataagttgttttcagtttatttccataagctctccgggattgcttatg 13571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 43504831 - 43504765
Alignment:
Q  63 aaacaacttatgacttgtctataagttgcttttaacttatttccattagctctccaagattgcttat 129  Q
    |||||||||| ||||||| |||||| || ||| | ||||||||||| || |||||||||| ||||||    
T  43504831 aaacaacttacgacttgtttataagctgttttcagcttatttccataagttctccaagatagcttat 43504765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 8806759 - 8806811
Alignment:
Q  64 aacaacttatgacttgtctataagttgcttttaacttatttccattagctctc 116  Q
    ||||||||||||| |||||||||| ||| ||||||||| ||| || |||||||    
T  8806759 aacaacttatgacatgtctataagctgcatttaacttacttctataagctctc 8806811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 12361266 - 12361218
Alignment:
Q  69 cttatgacttgtctataagttgcttttaacttatttccattagctctcc 117  Q
    |||||||| |||| ||||| || ||| ||||||||||||||||||||||    
T  12361266 cttatgacatgtccataagctgttttcaacttatttccattagctctcc 12361218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University