View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11228_low_13 (Length: 279)
Name: NF11228_low_13
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 17242067 - 17242314
Alignment:
| Q |
1 |
atagtcaatgaaattttatagagtcggccacacctaatcttaagtcaatattcaaaagtcaactaaaagttatagagtcggtctggctgacgctaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | |
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| T |
17242067 |
atagtcaatgaaattttatagagtcggccacaccgatgcttaagtcaatattcaaaagtcaactaaaagttatagagtcgatctggccgacgctaaagga |
17242166 |
T |
|
| Q |
101 |
tttattattnnnnnnnttccttcactatattccctaataaaccagttaacacatcaaatcagttgttcatatcactaataataaggtttaaaattaaaca |
200 |
Q |
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| T |
17242167 |
tttattattaaaaaaattccttcactttattccctaataaaccagttaacacatcaaatcagttgttcctatcactaataataaggtttaaaattaaaca |
17242266 |
T |
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| Q |
201 |
caagcataaaatgacaagcttgacattatttatcttttctcacatgta |
248 |
Q |
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| T |
17242267 |
cgagcataaaatgacaagcttgacattatttatcttttctcacatgta |
17242314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 12286562 - 12286657
Alignment:
| Q |
2 |
tagtcaatgaaattttatagagtcggccacacctaatcttaagtcaatattcaaaagtcaactaaaagttatagagtcggtctggctgacgctaaa |
97 |
Q |
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| T |
12286562 |
tagtcaacgaaattttatagagtcggccacacccatgctaaagtcaacaatgaaaagccaactaaaatttatcgagtcggcctggccgacgctaaa |
12286657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 3741572 - 3741537
Alignment:
| Q |
165 |
gttcatatcactaataataaggtttaaaattaaaca |
200 |
Q |
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| T |
3741572 |
gttcatatcactaataataaggtttaaaattaaaca |
3741537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 9391540 - 9391590
Alignment:
| Q |
47 |
aatattcaaaagtcaactaaaagttatagagtcggtctggctgacgctaaa |
97 |
Q |
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|||||| ||||||||||| ||| | ||||||||||||||||||||||||| |
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| T |
9391540 |
aatatttaaaagtcaacttaaattcctagagtcggtctggctgacgctaaa |
9391590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 3741919 - 3741887
Alignment:
| Q |
2 |
tagtcaatgaaattttatagagtcggccacacc |
34 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
3741919 |
tagtcaatgaaattttatagagttggccacacc |
3741887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 6739337 - 6739284
Alignment:
| Q |
42 |
aagtcaatattcaaaagtcaactaaaagttatagagtcggtctggctgacgcta |
95 |
Q |
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|||||||||||||||||| || |||| |||||||||||||| ||| ||||||| |
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| T |
6739337 |
aagtcaatattcaaaagtaaaaaaaaaattatagagtcggtcaggccgacgcta |
6739284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 9252765 - 9252713
Alignment:
| Q |
40 |
ttaagtcaatattcaaaagtcaactaaaagttatagagtcggtctggctgacg |
92 |
Q |
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|
||||||||||||| |||||||||| ||| || ||||||||||||||| |||| |
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| T |
9252765 |
ttaagtcaatatttaaaagtcaaccaaatcttttagagtcggtctggccgacg |
9252713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 9317484 - 9317536
Alignment:
| Q |
40 |
ttaagtcaatattcaaaagtcaactaaaagttatagagtcggtctggctgacg |
92 |
Q |
| |
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||||||||||||| |||||||||| ||| || ||||||||||||||| |||| |
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| T |
9317484 |
ttaagtcaatatttaaaagtcaaccaaatcttttagagtcggtctggccgacg |
9317536 |
T |
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