View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11228_low_16 (Length: 231)

Name: NF11228_low_16
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11228_low_16
NF11228_low_16
[»] chr5 (2 HSPs)
chr5 (1-231)||(17241589-17241819)
chr5 (23-128)||(22186013-22186118)
[»] chr2 (2 HSPs)
chr2 (12-167)||(25563974-25564129)
chr2 (160-231)||(34411712-34411782)
[»] chr4 (3 HSPs)
chr4 (18-164)||(14116730-14116876)
chr4 (18-128)||(8502333-8502443)
chr4 (1-77)||(9288042-9288117)
[»] chr6 (1 HSPs)
chr6 (14-113)||(23601028-23601127)
[»] chr3 (4 HSPs)
chr3 (12-107)||(47597471-47597566)
chr3 (18-167)||(10686545-10686694)
chr3 (30-107)||(20102398-20102475)
chr3 (19-152)||(20648709-20648842)
[»] chr7 (5 HSPs)
chr7 (1-167)||(17880215-17880380)
chr7 (168-224)||(2270001-2270057)
chr7 (168-231)||(4238570-4238633)
chr7 (18-113)||(19196949-19197044)
chr7 (18-167)||(22731442-22731591)
[»] scaffold0012 (1 HSPs)
scaffold0012 (168-231)||(146347-146410)
[»] chr1 (1 HSPs)
chr1 (168-231)||(9391174-9391237)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 17241589 - 17241819
Alignment:
Q  1 atgttacctcgaatgattaatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17241589 atgttacctcgaatgattaatgtcattgagtagtcattcaaaactcctttacttcaaatagaatgaactattacattatccttgtcttcgaatttctttg 17241688  T
Q  101 tttgtttttgcacattgttagaagaagaaaatttttaatactctgagtctgacagtgacattccttccactacaagaaaactgtgatttagcatcgatcg 200  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||||  ||||||||||||||     
T  17241689 tttgtttttgcacattgttagaagaagacaaattttaatactctgagtctgacagtgacattcctttcaatacaagaaaactgcaatttagcatcgatca 17241788  T
Q  201 aaaacccactctaatagggcaaaaaccgacg 231  Q
    |||||| ||||||||||||||||| ||||||    
T  17241789 aaaacctactctaatagggcaaaagccgacg 17241819  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 22186013 - 22186118
Alignment:
Q  23 tcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgcacattgttaga 122  Q
    |||||||||| |||||||||| |||||| ||||  |||||||||  | ||||||| || ||||||| ||||| |||||||||||| ||||| |||| |||    
T  22186013 tcattgagtattcattcaaaattcctttgcttcttataaaatgacatgttacattctctttgtctttgaattcctttgtttgtttctgcacgttgtcaga 22186112  T
Q  123 agaaga 128  Q
    ||||||    
T  22186113 agaaga 22186118  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 25564129 - 25563974
Alignment:
Q  12 aatgattaatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgc 111  Q
    |||| |||||||| |||||||||||||| ||| || ||| ||||||||| |||||  | || |||| || |||| || |||||||||||||||||| | |    
T  25564129 aatggttaatgtcgttgagtagtcattcgaaattcattttcttcaaatagaatgatttgttgcattctctttgtttttgaatttctttgtttgtttctac 25564030  T
Q  112 acattgttagaagaagaaaatttttaatactctgagtctgacagtgacattccttc 167  Q
    || | || ||||||||| || || || |||||| ||||||| ||||| ||||||||    
T  25564029 acgtggtcagaagaagacaaattatactactctaagtctgatagtgatattccttc 25563974  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 231
Target Start/End: Complemental strand, 34411782 - 34411712
Alignment:
Q  160 attccttccactacaagaaaactgtgatttagcatcgatcgaaaacccactctaatagggcaaaaaccgacg 231  Q
    |||||||||||||||||||||||||| |||||| |||  |  ||||||||||||| ||  ||||||||||||    
T  34411782 attccttccactacaagaaaactgtgttttagcgtcg-gctgaaacccactctaacagatcaaaaaccgacg 34411712  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 14116730 - 14116876
Alignment:
Q  18 taatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgcacattg 117  Q
    ||||||| |||| ||||||||||||| || ||| |||| |||| ||||| ||  |||||| |||||||||| ||||||  |||||||||| | ||  | |    
T  14116730 taatgtcgttgaatagtcattcaaaaatcttttgcttctaatagaatgatctgctacattctccttgtctttgaattttcttgtttgtttcttcatgtgg 14116829  T
Q  118 ttagaagaagaaaatttttaatactctgagtctgacagtgacattcc 164  Q
    | ||||||||||||||| || || |  |||||||| |||||||||||    
T  14116830 tcagaagaagaaaatttgtactatttagagtctgatagtgacattcc 14116876  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 8502333 - 8502443
Alignment:
Q  18 taatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgcacattg 117  Q
    ||||||| |||||||||||||  ||| |||||| |||  |||| ||||   ||||||||| || ||||| | |||||||| ||||||||| |||||||      
T  8502333 taatgtcgttgagtagtcatttgaaattcctttgcttttaatagaatggtatattacattctctttgtccttgaatttctctgtttgtttatgcacatga 8502432  T
Q  118 ttagaagaaga 128  Q
    | |||||||||    
T  8502433 tcagaagaaga 8502443  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9288117 - 9288042
Alignment:
Q  1 atgttacctcgaatgattaatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacatt 77  Q
    |||||||||| |||| | |||||| ||||||||||||||||||  |||||||||  |||| ||||| | ||||||||    
T  9288117 atgttacctcaaatggt-aatgtcgttgagtagtcattcaaaatgcctttacttttaatagaatgacccattacatt 9288042  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 23601127 - 23601028
Alignment:
Q  14 tgattaatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgcac 113  Q
    ||||||||||| |||||||||||||||||| |||| | |||||| || |||||  | || ||||  | ||||| | ||||||||||||||||||||||||    
T  23601127 tgattaatgtcgttgagtagtcattcaaaattcctctgcttcaattagaatgatttgtttcattccctttgtccttgaatttctttgtttgtttttgcac 23601028  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 47597471 - 47597566
Alignment:
Q  12 aatgattaatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgttt 107  Q
    |||| |||| |||||||||||||||||| ||| |||||| ||||||||  |||||   | |||||| || ||||||| ||||||||||||||||||    
T  47597471 aatggttaacgtcattgagtagtcattcgaaattcctttgcttcaaatggaatgattcactacattctctttgtctttgaatttctttgtttgttt 47597566  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 10686545 - 10686694
Alignment:
Q  18 taatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgcacattg 117  Q
    |||||||||||||||||||||| ||| || ||| |||| |||  |||||   ||| |||| || ||| | | |||||||||||||||||| | ||| | |    
T  10686545 taatgtcattgagtagtcattcgaaattcttttgcttctaattgaatgattcattgcattctctttgcccttgaatttctttgtttgtttctacacgtgg 10686644  T
Q  118 ttagaagaagaaaatttttaatactctgagtctgacagtgacattccttc 167  Q
    | ||||||| | || || || || ||| ||||||| ||||||||||||||    
T  10686645 tcagaagaatacaaattgtactagtcttagtctgatagtgacattccttc 10686694  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 20102475 - 20102398
Alignment:
Q  30 gtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgttt 107  Q
    |||||||||||||| || ||| ||||||||| |||||  | || |||| || ||||||| |||||| |||||||||||    
T  20102475 gtagtcattcaaaattcatttgcttcaaatagaatgatttgttgcattgtctttgtctttgaatttgtttgtttgttt 20102398  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 20648709 - 20648842
Alignment:
Q  19 aatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgcacattgt 118  Q
    |||||| |||||||||||||| ||| | |||| ||| ||||| |||||  | ||||||| || |  | || |||||||||||||||| |||| || | ||    
T  20648709 aatgtcgttgagtagtcattcgaaatttctttgctttaaatagaatgatttgttacattctcttgatatttgaatttctttgtttgtatttgtacgtggt 20648808  T
Q  119 tagaagaagaaaatttttaatactctgagtctga 152  Q
     ||||||| | || || || ||||||||||||||    
T  20648809 cagaagaatacaaattatactactctgagtctga 20648842  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 17880215 - 17880380
Alignment:
Q  1 atgttacctcgaatgattaatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttg 100  Q
    ||||| |||| ||||| ||||||| ||||||||  ||| |||| || ||| |||| |||| ||||| || |||| || || ||||  | |||||||||||    
T  17880215 atgttgcctcaaatgaataatgtcgttgagtagctattaaaaattcattttcttctaatagaatgatctgttactttctctttgtacttgaatttctttg 17880314  T
Q  101 tttgtttttgcacattgttagaagaagaaaatttttaatactctgagtctgacagtgacattccttc 167  Q
    ||| ||| | ||||| |||||||||||| || || || ||| |||||||||| ||||||||| ||||    
T  17880315 ttt-tttctacacatggttagaagaagacaaattgtactaccctgagtctgatagtgacatttcttc 17880380  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 2270057 - 2270001
Alignment:
Q  168 cactacaagaaaactgtgatttagcatcgatcgaaaacccactctaatagggcaaaa 224  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||| |||| ||||    
T  2270057 cactacaagaaaactgtgatttagcgtcggccgaaaacccactctaagagggtaaaa 2270001  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 4238570 - 4238633
Alignment:
Q  168 cactacaagaaaactgtgatttagcatcgatcgaaaacccactctaatagggcaaaaaccgacg 231  Q
    |||||||||| |||  || |||||| || | | |||||||||||||||||||||||||||||||    
T  4238570 cactacaagataacattgttttagcgtctaccaaaaacccactctaatagggcaaaaaccgacg 4238633  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 19197044 - 19196949
Alignment:
Q  18 taatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaactattacattatccttgtcttcgaatttctttgtttgtttttgcac 113  Q
    ||||||| |||||||||||||  ||| | |||| |||| ||||||||||  | ||| ||| || ||||| | |||||||||||||||||| |||||    
T  19197044 taatgtcgttgagtagtcatttgaaattactttgcttctaataaaatgacttgttatattttctttgtcattgaatttctttgtttgtttctgcac 19196949  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 22731442 - 22731591
Alignment:
Q  18 taatgtcattgagtagtcattcaaaactcctttacttcaaataaaatgaa-ctattacattatccttgtcttcgaatttctttgtttgtttttgcacatt 116  Q
    ||||||| ||||||||||| |||||| ||| || | || |||  |||| | || || |||| || ||||||| |||||| ||||||| ||| ||||| |     
T  22731442 taatgtcgttgagtagtcactcaaaattcccttgcatctaatggaatggatcttttccattctctttgtctttgaatttatttgttt-tttctgcacgtg 22731540  T
Q  117 gttagaagaagaaaatttttaatactctgagtctgacagtgacattccttc 167  Q
    || ||||||||| || || || |||||||||| ||| ||||||||||||||    
T  22731541 gtcagaagaagataaattgtactactctgagtttgatagtgacattccttc 22731591  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 146410 - 146347
Alignment:
Q  168 cactacaagaaaactgtgatttagcatcgatcgaaaacccactctaatagggcaaaaaccgacg 231  Q
    |||||||||||||||| | |||||| |||  | |||||||||||||| |||| |||||||||||    
T  146410 cactacaagaaaactgcgttttagcgtcggccaaaaacccactctaaaagggaaaaaaccgacg 146347  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 9391174 - 9391237
Alignment:
Q  168 cactacaagaaaactgtgatttagcatcgatcgaaaacccactctaatagggcaaaaaccgacg 231  Q
    |||||||||||||||| |||||||  |||  | |||||||||||||||||| | ||||||||||    
T  9391174 cactacaagaaaactgcgatttagagtcggccaaaaacccactctaataggactaaaaccgacg 9391237  T

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