View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11228_low_2 (Length: 576)
Name: NF11228_low_2
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 568
Target Start/End: Original strand, 8805982 - 8806532
Alignment:
| Q |
6 |
atgagatggacatcatagaaggacaatgtggttgataacatagtttaattgagtgtttagcactccaaatactt---tatgctagcaaaa-tcattagaa |
101 |
Q |
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| T |
8805982 |
atgagatagacataatagaaggaaaatgtggctgataacatagtttaattgagtatttaggacttcaaatacttacttatgctagcaaaaatcattagaa |
8806081 |
T |
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| Q |
102 |
gaagtttacaatgtaatgctacttaccagcaatgataaccatttttctttgatcatgtcttttgatgtagcagtcacttccatatgcttcctttccatcc |
201 |
Q |
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| T |
8806082 |
gaagtttacaatgtaatgctacttaccagcaatgataaccatttttctttgatcatgtcttttgatatagcagtcacttccatatgcttcctttccattc |
8806181 |
T |
|
| Q |
202 |
ttgatacaggctacagtggaaatacatcaagcaatacttaggtttccaaattttcttccatttaggagacgtttggataaacaccttaattaagcgctta |
301 |
Q |
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| T |
8806182 |
ttgatacatgctgcagtggaaatacatgaagtaatacttaggtttccaaattttcttccatttaggagacatttggataaacaccttaattaagcgatta |
8806281 |
T |
|
| Q |
302 |
ttgtaaaaagtggttatgtatcagctatttatgcaattgataaaggtaataataagggaaaactctatataagctctttacataagctagtttagagagt |
401 |
Q |
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| T |
8806282 |
ttgtaaaaagtggttatgtatcagctatttatgcaactgataaag---ataatgagggaaaactctatagaagtcctttacataagctaatttagatagt |
8806378 |
T |
|
| Q |
402 |
taatgaaaataaattgaacacaacttattaacatatcataagctatgttcataacttcttccaaacacctgcataagtgcttatatcataagacaagctt |
501 |
Q |
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| T |
8806379 |
ttataaaaataagt-------------ttaacatatcataagctattttcataacttattccaaacacatgcatatgtgcttatatcataaggtaagctt |
8806465 |
T |
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| Q |
502 |
gcataaactctaccaaattccaccttaatagtttaggtacaaccgagaaggagaagaaacaacagaa |
568 |
Q |
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| T |
8806466 |
gcataaactcttccaaattccaccttaatagtttaggtcgaactgagaagcagaagaaacaagagaa |
8806532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 370 - 466
Target Start/End: Complemental strand, 10199477 - 10199381
Alignment:
| Q |
370 |
ataagctctttacataagctagtttagagagttaatgaaaataaattgaacacaacttattaacatatcataagctatgttcataacttcttccaaa |
466 |
Q |
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| T |
10199477 |
ataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaa |
10199381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 447
Target Start/End: Original strand, 6647387 - 6647465
Alignment:
| Q |
369 |
tataagctctttacataagctagtttagagagttaatgaaaataaattgaacacaacttattaacatatcataagctat |
447 |
Q |
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| T |
6647387 |
tataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcataagctat |
6647465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 36578498 - 36578563
Alignment:
| Q |
392 |
tttagagagttaatgaaaataaattgaacacaacttattaacatatcataagctatgttcataact |
457 |
Q |
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| T |
36578498 |
tttagagagtttatgaaaataaattgaaaataactaataaacatattataagttgttttcataact |
36578563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 5942807 - 5942839
Alignment:
| Q |
272 |
gtttggataaacaccttaattaagcgcttattg |
304 |
Q |
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| T |
5942807 |
gtttggataaacaacttaattaagcgcttattg |
5942839 |
T |
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