View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11228_low_3 (Length: 483)

Name: NF11228_low_3
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11228_low_3
NF11228_low_3
[»] chr8 (9 HSPs)
chr8 (7-468)||(6811332-6811772)
chr8 (12-467)||(6840795-6841247)
chr8 (7-311)||(6621257-6621558)
chr8 (27-311)||(6595463-6595744)
chr8 (160-243)||(6632450-6632533)
chr8 (414-467)||(6595847-6595900)
chr8 (414-467)||(6621661-6621714)
chr8 (41-97)||(6835492-6835548)
chr8 (414-467)||(6849913-6849966)
[»] scaffold0470 (2 HSPs)
scaffold0470 (7-311)||(10675-10976)
scaffold0470 (414-467)||(11079-11132)
[»] scaffold0514 (2 HSPs)
scaffold0514 (7-273)||(704-967)
scaffold0514 (414-467)||(510-563)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 7 - 468
Target Start/End: Original strand, 6811332 - 6811772
Alignment:
Q  7 gaagcagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaag 106  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6811332 gaaggagagacaatgaacattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaag 6811431  T
Q  107 ggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagtttaatagcaacagtcatcgcaacaatgac 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6811432 ggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttggtttaatagcaacagtcatcgcaacaatgac 6811531  T
Q  207 atttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaacgcaaatccacccagtggaaacacaaat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                      
T  6811532 atttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaacacaaatcca------------------ 6811613  T
Q  307 ccacctagtgccgaaaatcttgacaagttttgttctagtttcaacggcatacttttatgtccgggtgaagctgtcttagccgctgtaaaacctaaaaaat 406  Q
       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6811614 ---cctagtgccgaaaatcttgataagttttgttctagtttcaacggcatacttttatgtccgggtgaagctgtcttagccgctgtaaatcctaaaaaat 6811710  T
Q  407 atagtttgttccttatttccaacacaatttgttttattggatcactaattatttgtatcttc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6811711 atagtttgttccttatttccaacacaatttgttttattggatcactaattatttgtatcttc 6811772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 12 - 467
Target Start/End: Original strand, 6840795 - 6841247
Alignment:
Q  12 agagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggata 111  Q
    ||||||||||| || ||||| ||||||||||||||||||||  |||||| || | | || |||||||||||||||||||||||||| |||||||||||||    
T  6840795 agagacaatgaacactgaagtggaaaatcatggtggttcaaccgaaaccccaactattggggaaccaaagaaaggttggagaaaggtattagaagggata 6840894  T
Q  112 gagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagtttaatagcaacagtcatcgcaacaatgacatttc 211  Q
    | ||||||| |||| |||||||||||||||   ||||||| |||||||||| ||||||||||  | |||||||| |||||||||||||||||||||||||    
T  6840895 gggagttggttgtcctacaaagacaaggag---aaatggttggatgatatgcgagggaacttgggcttaatagcgacagtcatcgcaacaatgacatttc 6840991  T
Q  212 aaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaacgcaaatccacccagtggaaacacaaatccacc 311  Q
    |||||||||||||||| || |||||  ||| |||||| ||||||| | || |||||||| ||   ||||||||||||||||||   ||| ||||||||||    
T  6840992 aaatggttttaaatccgcccggtggtgttatgtcgattaaagatggcacagatccacccggtaccaacgcaaatccacccagtaccaacgcaaatccacc 6841091  T
Q  312 tagtgccgaaaatcttgacaagttttgttctagtttcaacggcatacttttatgtccgggtgaagctgtcttagccgctgtaaaacctaaaaaatatagt 411  Q
       ||||||  ||  ||||||   |||| ||  | || |||||  || | ||||||||||||||||||||||||||| ||   |  || |   ||||  |    
T  6841092 agatgccgacgattctgacaaaaattgtacttttatctacggcgaacgtctatgtccgggtgaagctgtcttagccgttggggactcttatggatatttt 6841191  T
Q  412 ttgttccttatttccaacacaatttgttttattggatcactaattatttgtatctt 467  Q
      |||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||    
T  6841192 cagttccttatttccaacacaatttgttttgttgcatcactaagtatttgtctctt 6841247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 6621257 - 6621558
Alignment:
Q  7 gaagcagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaag 106  Q
    |||| ||| ||||||| || ||||| |||||||||||| ||||||| ||||||||||  |||| ||||| |||||||||| |||||||||| ||||||      
T  6621257 gaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaaccgcactgaataaggaatcaaagaaaggatggagaaaggtattagaga 6621356  T
Q  107 ggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagtttaatagcaacagtcatcgcaacaatgac 206  Q
     ||||  ||||||| |||| ||||||| || |||    ||||||| ||| |||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  6621357 agatacggagttggttgtcctacaaagtcagggac---aaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgac 6621453  T
Q  207 atttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaacgcaaatccacccagtggaaacacaaat 306  Q
    |||||||||| ||||||||||||| |||||| ||| |||||| |||||||  | |||||||||||||    |||||| ||||||||||   ||| |||||    
T  6621454 atttcaaatgattttaaatccacccggtggcgttatgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccagtaccaacgcaaat 6621553  T
Q  307 ccacc 311  Q
    |||||    
T  6621554 ccacc 6621558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 27 - 311
Target Start/End: Original strand, 6595463 - 6595744
Alignment:
Q  27 tgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaagggatagagagttgggtgtca 126  Q
    ||||| || |||| |||| ||||||| |||||||||| ||||| ||||| |||||||||| |||||||||| | ||||   ||||  ||||||| ||||     
T  6595463 tgaagtggcaaattatggaggttcaacagaaaccgcaccgaataaggaatcaaagaaaggatggagaaaggtaatagagaagatacggagttggttgtcc 6595562  T
Q  127 tacaaagacaaggaggataaatggtgggatgatatgagagggaactttagtttaatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatc 226  Q
    |||||| |||||||    ||||||| ||| |||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  6595563 tacaaaaacaaggac---aaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgacatttcaaatgattttaaatc 6595659  T
Q  227 cacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaacgcaaatccacccagtggaaacacaaatccacc 311  Q
    |||| |||||| ||| |||||| |||||||  | |||||||||||||    |||||| ||||||||||   ||| ||||||||||    
T  6595660 cacccggtggcgttatgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccagtactaacgcaaatccacc 6595744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 6632450 - 6632533
Alignment:
Q  160 atgagagggaactttagtttaatagcaacagtcatcgcaacaatgacatttcaaatggttttaaatccacctggtggcattagg 243  Q
    ||||||||||| |||||| || |||||| | |||| |||||||| ||||||||||||| |||||||||||| |||||| |||||    
T  6632450 atgagagggaattttagtgtagtagcaatattcatagcaacaataacatttcaaatgggtttaaatccaccgggtggcgttagg 6632533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 6595847 - 6595900
Alignment:
Q  414 gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt 467  Q
    |||||||||||| ||||||||||||||||||| |||||||| | ||||| ||||    
T  6595847 gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt 6595900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 6621661 - 6621714
Alignment:
Q  414 gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt 467  Q
    |||||||||||| ||||||||||||||||||| |||||||| | ||||| ||||    
T  6621661 gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt 6621714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Original strand, 6835492 - 6835548
Alignment:
Q  41 atggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaagg 97  Q
    ||||| |||||| | ||||| || ||| |||||||||||||||||||||||||||||    
T  6835492 atggtcgttcaacaaaaaccccatcgagtgaggaaccaaagaaaggttggagaaagg 6835548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 6849966 - 6849913
Alignment:
Q  414 gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt 467  Q
    ||||||||| || ||||||||||||||| ||| |||||||| ||||||| ||||    
T  6849966 gttccttatatcaaacacaatttgttttgttgcatcactaagtatttgtctctt 6849913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 111; Significance: 8e-56; HSPs: 2)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 10675 - 10976
Alignment:
Q  7 gaagcagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaag 106  Q
    |||| ||| ||||||| || ||||| |||||||||||| ||||||| ||||||||||  |||| ||||| |||||||||| |||||||||| ||||||      
T  10675 gaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaaccgcactgaataaggaatcaaagaaaggatggagaaaggtattagaga 10774  T
Q  107 ggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagtttaatagcaacagtcatcgcaacaatgac 206  Q
     ||||  ||||||| |||| ||||||| || |||    ||||||| ||| |||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  10775 agatacggagttggttgtcctacaaagtcagggac---aaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgac 10871  T
Q  207 atttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagtggaaacgcaaatccacccagtggaaacacaaat 306  Q
    |||||||||| ||||||||||||| |||||| ||| |||||| |||||||  | |||||||||||||    |||||| ||||||||||   ||| |||||    
T  10872 atttcaaatgattttaaatccacccggtggcgttatgtcgattaaagatggggaaaatccacccagtaccgacgcaagtccacccagtaccaacgcaaat 10971  T
Q  307 ccacc 311  Q
    |||||    
T  10972 ccacc 10976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 11079 - 11132
Alignment:
Q  414 gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt 467  Q
    |||||||||||| ||||||||||||||||||| |||||||| | ||||| ||||    
T  11079 gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt 11132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 7 - 273
Target Start/End: Complemental strand, 967 - 704
Alignment:
Q  7 gaagcagagacaatgagcattgaagaggaaaatcatggtggttcaatagaaaccgcagcgaatgaggaaccaaagaaaggttggagaaaggcattagaag 106  Q
    |||| ||| ||||||| || ||||| |||||||||||| ||||||| |||||||||| ||||| ||||| |||||||||| |||||||| | ||||||      
T  967 gaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaaccgcaccgaataaggaatcaaagaaaggatggagaaatgtattagaga 868  T
Q  107 ggatagagagttgggtgtcatacaaagacaaggaggataaatggtgggatgatatgagagggaactttagtttaatagcaacagtcatcgcaacaatgac 206  Q
     ||||  ||||||| |||| |||||||| | |||    ||||||| ||| |||||||||||||||||  |||||||||| ||||||||||||||||||||    
T  867 agatacggagttggttgtcctacaaagatagggac---aaatggttggaggatatgagagggaacttgggtttaatagcgacagtcatcgcaacaatgac 771  T
Q  207 atttcaaatggttttaaatccacctggtggcattaggtcgatgaaagatgacgcaaatccacccagt 273  Q
    |||||||||| ||||||||||||| |||||| ||| |||||| |||||||  | |||||||||||||    
T  770 atttcaaatgattttaaatccacccggtggcgttatgtcgattaaagatggggaaaatccacccagt 704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 563 - 510
Alignment:
Q  414 gttccttatttccaacacaatttgttttattggatcactaattatttgtatctt 467  Q
    |||||||||||| ||||||||||||||||||| |||||||| | ||||| ||||    
T  563 gttccttatttcgaacacaatttgttttattgcatcactaagtgtttgtctctt 510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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