View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11228_low_6 (Length: 403)
Name: NF11228_low_6
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 41080676 - 41081050
Alignment:
| Q |
12 |
agagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtcttagatttgtattgtacatgcttaaannnnnnncaagaagcagc |
111 |
Q |
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| T |
41080676 |
agagaataatgagcaccgatcctccattctgaatctggaactgaaggggaccggtcttagatttgtattgtacatgcttaaatttttt-caagaagcagc |
41080774 |
T |
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| Q |
112 |
atttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgattgtgagcaaggagatggttattcagaggatatcatggtggcaa |
211 |
Q |
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| T |
41080775 |
atttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcaattgattgtgagcaaggagatggttattcagaggatatcatggtggcaa |
41080874 |
T |
|
| Q |
212 |
ggagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatctgcatattttgaggcatctgcggttaatattttaggtaattta |
311 |
Q |
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| T |
41080875 |
tgagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatctgcatattttgaggcatctgcggttaatattttaggtaattta |
41080974 |
T |
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| Q |
312 |
ttttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatgataagtaggggtgttat |
387 |
Q |
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| T |
41080975 |
ttttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatgataagtaggggggttat |
41081050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 41088931 - 41089048
Alignment:
| Q |
258 |
tgtgtgtaatctgcatattttgaggcatctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatatt |
357 |
Q |
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| T |
41088931 |
tgtgtgtaatctgcatattttgaggcagctactgttaatattctaggtaatttattttgtataatctacatatatgaggcagctgcttctattttatatc |
41089030 |
T |
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| Q |
358 |
atggtggagtatgataag |
375 |
Q |
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| T |
41089031 |
atggtggagtttgataag |
41089048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 41103167 - 41103310
Alignment:
| Q |
101 |
caagaagcagcatttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgattgtgagcaaggagat-------------ggtt |
187 |
Q |
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| T |
41103167 |
caagaagtggcatttttgtgagacttgtaattcgtagcagtttgcatttcattctttagtcaagtgattgtgagcagggagatggttccaatgaagggtt |
41103266 |
T |
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| Q |
188 |
attcagaggatatcatggtggcaaggagatttgtggagtctctt |
231 |
Q |
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| T |
41103267 |
attcagtggatatcatggtgacaagtagatttgtggagtctctt |
41103310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 1216630 - 1216677
Alignment:
| Q |
184 |
ggttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
231 |
Q |
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| T |
1216630 |
ggttattcaacggatataatggtggcaaggagatttgtggagtctctt |
1216677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 41088836 - 41088913
Alignment:
| Q |
185 |
gttattcagaggatatcatggtggcaaggagatttgtggagtc----tcttatgccaatatacagtattatgctagtt |
258 |
Q |
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| T |
41088836 |
gttattcagaggatatcatggtggtaaggagatttatggggtctctttcttgtgccaattcgcagtattatgctagtt |
41088913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 187
Target Start/End: Original strand, 1216545 - 1216619
Alignment:
| Q |
113 |
tttttatgaggcttgtaattcatagaagtttgcatttcattctttagtcgattgattgtgagcaaggagatggtt |
187 |
Q |
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| T |
1216545 |
tttttgtgaggattgtaattcgtagcaatttgcatttaattctttactcaagtgattgtgagcagggagaaggtt |
1216619 |
T |
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