View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11228_low_9 (Length: 386)
Name: NF11228_low_9
Description: NF11228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11228_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 45 - 369
Target Start/End: Complemental strand, 3350666 - 3350342
Alignment:
| Q |
45 |
taatatgggatcgggcggtgaaatgcatttctattaattaatgaagagattgaaaaaactgaatcacggaacctaatctacaatctaaaaattataaact |
144 |
Q |
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| T |
3350666 |
taatatgggatcgggcggtgaaatgcatttctattaattaatgaagagatcgaaaaaactgaatcacggaacctaatctacaatctaaaaattataaact |
3350567 |
T |
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| Q |
145 |
caaagggacaaattcttatgttattaaaagtgaaaattccttcaccatctgctagatacttagatgccactggattttaagataacataactttctctat |
244 |
Q |
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| T |
3350566 |
caaagggacaaattcttatgttattaaaagtgaaaattccttcaccatctgctagatacttagatgccactggattttaagataacataactttctctat |
3350467 |
T |
|
| Q |
245 |
cattctttcttctttaacatacccaattgatggtgttattcctacataggatgccacaaagttacttctagtacacttttaatttttcttttggtttcaa |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3350466 |
cattctttcttctttaacatacccaattgatggtgttattcctacataggatgccacaaagttacttctagtacacttttaatttttcttttggtttcaa |
3350367 |
T |
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| Q |
345 |
ttagaaaatactataattgcaacct |
369 |
Q |
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||||||||||||||||||||||||| |
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| T |
3350366 |
ttagaaaatactataattgcaacct |
3350342 |
T |
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