View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11229_high_10 (Length: 242)
Name: NF11229_high_10
Description: NF11229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11229_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 43396503 - 43396738
Alignment:
| Q |
1 |
attccatctcaccaataaaattattaaaaagatacatctccaataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacac |
100 |
Q |
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| T |
43396503 |
attccatctcaccaataaaattattaaaaagatacatctccaataattgaccacttgaagtttcttcattaattccccttctttcatctctccggcacac |
43396602 |
T |
|
| Q |
101 |
cacattaaaatctccaagaatacaccactccccttcacctctattagcacgctcctccactaacgcctcccacatcctcctcttagccaccaaatcacat |
200 |
Q |
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| T |
43396603 |
cacattaaaatctccaagaatacaccacgccccttcacctctattagcacgctcctccactaacgcctcccacatcct-ctcttagccaccaaatcacat |
43396701 |
T |
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| Q |
201 |
ttagaataaacattaaccacaatacatctctgcttct |
237 |
Q |
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| T |
43396702 |
ttagaataaacattaaccacaatacatctcttcttct |
43396738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 8507639 - 8507701
Alignment:
| Q |
167 |
ctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatct |
229 |
Q |
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|||||||| |||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| |
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| T |
8507639 |
ctcccacaacctccttttagccaccaaatcacacttagaatacacattgatcacaatacatct |
8507701 |
T |
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