View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11229_high_6 (Length: 317)
Name: NF11229_high_6
Description: NF11229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11229_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 1017395 - 1017110
Alignment:
| Q |
19 |
gtgtaatctgagtcgatcaaatgaggaaaatttagcttagcttttgagccacgtattttaaacgcagctcgatcataagccaacgctgcattctcagccg |
118 |
Q |
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| T |
1017395 |
gtgtaatctgagtcgatcaaatgaggaaaatttagcttagcttttgagccacgtattttaaacgcagctcgatcataagccaaagctgcattctcagccg |
1017296 |
T |
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| Q |
119 |
tttcataagtcccaagccacaccctcgcgccatttctcttaggatcccttatctcagccgcatactttccccaaggccttctcctaactccacggtaccc |
218 |
Q |
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| T |
1017295 |
tttcataagtcccaagccacaccctcgcgccatttctcttaggatcccttatctcagccgcatactttccccaaggccttctcctaactccacggtaccc |
1017196 |
T |
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| Q |
219 |
taaccttttactagtcgttggcgcttgttgcacgtgagcaacactcaccaatgaagttccactgctttgaccttgatcttctattt |
304 |
Q |
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| T |
1017195 |
taaccttttactagtcgttggcacttgttgcacgtgagcaacactcgccaatgaagttccactgctttgaccttgatcttctattt |
1017110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 1002568 - 1002737
Alignment:
| Q |
28 |
gagtcgatcaaatgaggaaaatttagcttagcttttgagccacgtattttaaacgcagctcgatcataagccaacgctgcattctcagccgtttcataag |
127 |
Q |
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| T |
1002568 |
gagtcaatcaaatgagggaagttcaacttagccttcgagccgcgcatcttaaaagcggctcggtcataagccaaagcagcatcttcagccgactcataag |
1002667 |
T |
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| Q |
128 |
tcccaagccacaccctcgcgccatttctcttaggatcccttatctcagccgcatactttccccaaggcct |
197 |
Q |
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| T |
1002668 |
tcccaagccacaccctcgcgccgtttttatttggatctctaatctcagctgcaaactttccccaaggcct |
1002737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 15403609 - 15403561
Alignment:
| Q |
169 |
atctcagccgcatactttccccaaggccttctcctaactccacggtacc |
217 |
Q |
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||||||||| |||| |||||||| ||||||||||| || |||||||||| |
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| T |
15403609 |
atctcagccccatattttccccatggccttctccttacaccacggtacc |
15403561 |
T |
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