View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11229_low_1 (Length: 612)
Name: NF11229_low_1
Description: NF11229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11229_low_1 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 6 - 583
Target Start/End: Complemental strand, 28444970 - 28444393
Alignment:
| Q |
6 |
aggagcacagaaccaaatgccaagaagtgaaacaactcctaatgtccatgtaacctgcagattatttatttgtcaggtaaaaccaaatgatactgtgaca |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28444970 |
aggaacactgaaccaaatgccaagaagtgaaacaactcctaatgtccatgtaacctgcagattatttatttgtcaggtaaaaccaaatgatactgtgaca |
28444871 |
T |
|
| Q |
106 |
agatgactaagcaaaaagcttaaaaggttgctgaaaggcaccaaaagaaacttcttgaaatcccgtccggaagctaggactcgaaatgttttgagtagtt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28444870 |
agatgactaagcaaaaagcttaaaaggttgctgaaaggcaccaaaagaaacttcttgaaatcccgtccggaagctaggactcgaaatgttttgagtagtt |
28444771 |
T |
|
| Q |
206 |
tgttaatgttttttgtcattgaaatagcagttttaaaaaccatcccttctggtatgatgaatgctgatgacttaggtcgagatctgtattaaaaagaaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28444770 |
tgttaatgttttttgtcattgaaatagcagttttaaaaaccatcccttctggtatgatgaatgctgatgacttaggtcgagatctgtattaaaaagaaaa |
28444671 |
T |
|
| Q |
306 |
tgtataattcattcattaaaaatagaaaagcacttgagtaactgagtataaagtgaattaaactcacatgccaatcaaggaccttagattggtccagagg |
405 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28444670 |
tgtataattcattcattaaaaagagaaaagcacttaagtaactgagtataaagtgaattaaactcacatgccaatcaaggaccttagattggtccagagg |
28444571 |
T |
|
| Q |
406 |
aacaacattgccaatagtattaggagagagtcacaaatgatactaagcagagtgtattccatcatcttaaatgctaaccatatgacagttacaccagcta |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28444570 |
aacaacattgccaatagtattaggagagagtcacaaatgatactaagcagagtgtattccatcatcttaaatgctaaccatatgacagttacaccagcta |
28444471 |
T |
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| Q |
506 |
gaatgcttgctgtgatcctcttctctctccatagtattatatcagcagctataagcagacataaattttatcacaacc |
583 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28444470 |
gaatgcttgctgtgatcctcttctctctccatagtattatatcagcagctataagcagacataaattttatcacaacc |
28444393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 33102037 - 33102180
Alignment:
| Q |
7 |
ggagcacagaaccaaatgccaagaagtgaaacaactcctaatgtccatgtaacctgcagattatttatttgtcaggtaaaaccaaatgatactgtgacaa |
106 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
33102037 |
ggagcactgaaccaaatgccaagaagtgaaacaactcctaatgtccatgtaacctgcagattatttacttgtcaggcaaaaccaaatgatactgtgacaa |
33102136 |
T |
|
| Q |
107 |
gatgactaagcaaaaagcttaaaaggttgctgaaaggcaccaaa |
150 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
33102137 |
gatgactaagcaaaaagcataagaggttgctgaaaggcaccaaa |
33102180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 92851 - 93000
Alignment:
| Q |
7 |
ggagcacagaaccaaatgccaagaagtgaaacaactcctaatgtccatgtaacctgcagattatttatttgtcaggtaaaaccaaatgatactgtgacaa |
106 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
92851 |
ggagcactgaaccaaatgccaagatgtgaaacaactcctaatgtccatgtaacctgcagattatttacttgtcaggcaaaaccaaatgatattgtgacaa |
92950 |
T |
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| Q |
107 |
gatgactaagcaaaaagcttaaaaggttgctgaaaggcaccaaaagaaac |
156 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||||||||| |||| |
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| T |
92951 |
gatgactaagcaaaaagcataagaggttcctgaaaggcaccaaaacaaac |
93000 |
T |
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