View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11229_low_3 (Length: 481)

Name: NF11229_low_3
Description: NF11229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11229_low_3
NF11229_low_3
[»] chr3 (38 HSPs)
chr3 (305-464)||(50880155-50880314)
chr3 (122-210)||(50879972-50880060)
chr3 (360-464)||(11348165-11348269)
chr3 (122-210)||(47430932-47431020)
chr3 (379-442)||(21728274-21728337)
chr3 (122-210)||(21728185-21728273)
chr3 (122-189)||(28776726-28776793)
chr3 (1-40)||(50879851-50879890)
chr3 (122-188)||(37610538-37610604)
chr3 (1-38)||(17740994-17741031)
chr3 (1-38)||(19042314-19042351)
chr3 (1-38)||(31937199-31937236)
chr3 (1-38)||(37610680-37610717)
chr3 (1-38)||(52522090-52522127)
chr3 (122-174)||(24753266-24753318)
chr3 (1-38)||(5689883-5689920)
chr3 (1-38)||(28777604-28777641)
chr3 (1-38)||(31938224-31938261)
chr3 (1-38)||(35758168-35758205)
chr3 (1-38)||(35759148-35759185)
chr3 (1-38)||(43393970-43394007)
chr3 (1-38)||(46903541-46903578)
chr3 (1-38)||(53180721-53180758)
chr3 (1-38)||(54354308-54354345)
chr3 (122-167)||(55210059-55210104)
chr3 (122-166)||(11348271-11348315)
chr3 (1-36)||(5691014-5691049)
chr3 (4-38)||(17116368-17116402)
chr3 (1-38)||(2233222-2233259)
chr3 (1-38)||(28776612-28776649)
chr3 (1-38)||(43392770-43392807)
chr3 (1-38)||(46902495-46902532)
chr3 (1-38)||(47429786-47429823)
chr3 (1-38)||(47431104-47431141)
chr3 (1-38)||(53764914-53764951)
chr3 (1-38)||(55209945-55209982)
chr3 (1-38)||(55210825-55210862)
chr3 (122-174)||(39133396-39133448)
[»] chr4 (23 HSPs)
chr4 (308-433)||(48081067-48081192)
chr4 (122-210)||(18091867-18091955)
chr4 (122-189)||(34095432-34095499)
chr4 (122-189)||(38032189-38032256)
chr4 (1-38)||(18091744-18091781)
chr4 (126-187)||(2293201-2293262)
chr4 (1-38)||(7261460-7261497)
chr4 (1-38)||(8814298-8814335)
chr4 (1-38)||(8815274-8815311)
chr4 (1-34)||(17356525-17356558)
chr4 (1-38)||(23757887-23757924)
chr4 (1-38)||(34095576-34095613)
chr4 (1-38)||(35927033-35927070)
chr4 (1-38)||(36074711-36074748)
chr4 (1-38)||(38031332-38031369)
chr4 (1-38)||(38032337-38032374)
chr4 (1-38)||(56234938-56234975)
chr4 (126-172)||(10803179-10803225)
chr4 (1-38)||(5433324-5433361)
chr4 (1-38)||(22622031-22622068)
chr4 (1-38)||(22623060-22623097)
chr4 (1-38)||(35925855-35925892)
chr4 (427-464)||(48080489-48080526)
[»] chr1 (23 HSPs)
chr1 (122-210)||(52759650-52759738)
chr1 (311-385)||(36808319-36808393)
chr1 (124-188)||(17244467-17244531)
chr1 (122-189)||(7111248-7111315)
chr1 (125-184)||(51468673-51468732)
chr1 (1-38)||(47533771-47533808)
chr1 (1-38)||(52759527-52759564)
chr1 (1-38)||(52761513-52761550)
chr1 (1-36)||(1823215-1823250)
chr1 (1-40)||(5488665-5488704)
chr1 (1-38)||(5488784-5488821)
chr1 (1-38)||(7111392-7111429)
chr1 (1-38)||(21203175-21203212)
chr1 (1-38)||(50484913-50484950)
chr1 (1-38)||(51468503-51468540)
chr1 (1-38)||(51693311-51693348)
chr1 (3-35)||(18819428-18819460)
chr1 (1-35)||(40187766-40187800)
chr1 (126-188)||(51218647-51218709)
chr1 (1-38)||(7110390-7110427)
chr1 (1-38)||(38235067-38235104)
chr1 (1-38)||(45229520-45229557)
chr1 (1-38)||(51468818-51468855)
[»] chr7 (31 HSPs)
chr7 (122-210)||(9392549-9392637)
chr7 (385-464)||(18852078-18852157)
chr7 (122-210)||(43114830-43114919)
chr7 (122-210)||(12630841-12630935)
chr7 (140-210)||(29186959-29187029)
chr7 (126-188)||(37236078-37236140)
chr7 (122-187)||(13599036-13599101)
chr7 (122-184)||(35314930-35314992)
chr7 (1-38)||(29186828-29186865)
chr7 (1-38)||(32518576-32518613)
chr7 (1-38)||(44748480-44748517)
chr7 (1-38)||(7011798-7011835)
chr7 (1-38)||(7027156-7027193)
chr7 (1-38)||(13597307-13597344)
chr7 (1-38)||(18788477-18788514)
chr7 (1-38)||(19217791-19217828)
chr7 (1-38)||(29187947-29187984)
chr7 (1-38)||(37237145-37237182)
chr7 (1-38)||(43113838-43113875)
chr7 (1-38)||(43961097-43961134)
chr7 (1-38)||(44417621-44417658)
chr7 (1-38)||(45399927-45399964)
chr7 (1-38)||(9391683-9391720)
chr7 (1-38)||(9392732-9392769)
chr7 (1-38)||(13599174-13599211)
chr7 (1-38)||(26005515-26005552)
chr7 (1-38)||(27072571-27072608)
chr7 (1-38)||(27205705-27205742)
chr7 (1-38)||(43962486-43962523)
chr7 (1-38)||(44231778-44231815)
chr7 (6-38)||(9357713-9357745)
[»] chr5 (13 HSPs)
chr5 (122-209)||(13277984-13278071)
chr5 (305-386)||(13277804-13277877)
chr5 (122-189)||(19229842-19229909)
chr5 (1-38)||(12372478-12372515)
chr5 (1-38)||(13278148-13278185)
chr5 (1-38)||(4031985-4032022)
chr5 (1-38)||(6803542-6803579)
chr5 (1-38)||(18654461-18654498)
chr5 (1-38)||(39350562-39350599)
chr5 (2-38)||(39164219-39164255)
chr5 (1-35)||(9083216-9083250)
chr5 (1-38)||(12373634-12373671)
chr5 (1-38)||(19229002-19229039)
[»] chr8 (18 HSPs)
chr8 (140-210)||(9244360-9244430)
chr8 (1-38)||(9244229-9244266)
chr8 (1-38)||(9245348-9245385)
chr8 (122-186)||(39325519-39325583)
chr8 (1-38)||(20309087-20309124)
chr8 (1-38)||(21095720-21095757)
chr8 (1-38)||(26364905-26364942)
chr8 (1-38)||(30640961-30640998)
chr8 (1-38)||(41636995-41637032)
chr8 (151-188)||(44102970-44103007)
chr8 (1-38)||(522014-522051)
chr8 (1-38)||(22012301-22012338)
chr8 (1-38)||(22013176-22013213)
chr8 (1-38)||(26366111-26366148)
chr8 (1-38)||(34642828-34642865)
chr8 (122-163)||(34643754-34643795)
chr8 (1-38)||(34643882-34643919)
chr8 (1-38)||(41638070-41638107)
[»] scaffold0878 (1 HSPs)
scaffold0878 (1-38)||(2943-2980)
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-38)||(9321-9358)
[»] scaffold0141 (2 HSPs)
scaffold0141 (1-38)||(31197-31234)
scaffold0141 (1-38)||(35202-35239)
[»] scaffold0049 (2 HSPs)
scaffold0049 (1-38)||(83578-83615)
scaffold0049 (1-38)||(79573-79610)
[»] chr6 (11 HSPs)
chr6 (1-38)||(27719899-27719936)
chr6 (1-38)||(34996678-34996715)
chr6 (122-189)||(11801115-11801182)
chr6 (122-176)||(32348090-32348144)
chr6 (1-38)||(3000710-3000747)
chr6 (1-38)||(21095296-21095333)
chr6 (1-38)||(32347972-32348009)
chr6 (1-38)||(32348954-32348991)
chr6 (1-38)||(34995515-34995552)
chr6 (7-38)||(21094575-21094606)
chr6 (1-38)||(32713800-32713837)
[»] chr2 (4 HSPs)
chr2 (1-38)||(27892253-27892290)
chr2 (1-38)||(16602889-16602926)
chr2 (151-188)||(14715062-14715099)
chr2 (1-38)||(27891270-27891307)
[»] scaffold0084 (1 HSPs)
scaffold0084 (133-186)||(12870-12923)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-38)||(104415-104452)
[»] scaffold1425 (1 HSPs)
scaffold1425 (1-38)||(298-335)
[»] scaffold0098 (1 HSPs)
scaffold0098 (122-167)||(41269-41314)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 4e-85; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 305 - 464
Target Start/End: Original strand, 50880155 - 50880314
Alignment:
Q  305 ttcgttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50880155 ttcgttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagta 50880254  T
Q  405 gcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcattctact 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50880255 gcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcattctact 50880314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 50879972 - 50880060
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50879972 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 50880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 360 - 464
Target Start/End: Complemental strand, 11348269 - 11348165
Alignment:
Q  360 aacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcatt 459  Q
    |||||||||||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  11348269 aacagtgattgaattgaatcaagcaaacatttcacaaaagcagtagcaataactccttaacttcaacaaccatggcagcatcttctctaacatcctcatt 11348170  T
Q  460 ctact 464  Q
    |||||    
T  11348169 ctact 11348165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 47431020 - 47430932
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  47431020 taaacctactatttcatcactacaccaccatcattgtcatcttcatctatcatcatcaacaccctccaatcactccaccataaccatcc 47430932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 379 - 442
Target Start/End: Original strand, 21728274 - 21728337
Alignment:
Q  379 caaacaagcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatct 442  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  21728274 caaacaagcatttcacaaacacagtagcaagaacttcttaacttcaacaaccatggcagcatct 21728337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 21728185 - 21728273
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    ||||||||||||||| |||||||||||  |||||| |||||||||||||||||||| |||||||| || |||||||| ||||| |||||    
T  21728185 taaacctactatttagtcactacaccaccatcattatcatcttcatctatcatcatcaacaccctgcaatcactccatcataatcatcc 21728273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 28776726 - 28776793
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcca 189  Q
    |||||| | ||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||    
T  28776726 taaaccaattatttaatcactacaccaccatcattgtcatcttcatctatcatcatcaacacactcca 28776793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50879851 - 50879890
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaatttgt 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50879851 tctatcagattttatagtgtatcaccaacacctaatttgt 50879890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 37610604 - 37610538
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcc 188  Q
    |||||||||||||| |||||||||  |  ||||| ||||||||||||||||||||| ||||||||||    
T  37610604 taaacctactatttgatcactacaataccatcatagtcatcttcatctatcatcatcaacaccctcc 37610538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17740994 - 17741031
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17740994 tctatcagattttatagtgtatcaccaacacctaattt 17741031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19042314 - 19042351
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19042314 tctatcagattttatagtgtatcaccaacacctaattt 19042351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31937199 - 31937236
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31937199 tctatcagattttatagtgtatcaccaacacctaattt 31937236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37610717 - 37610680
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37610717 tctatcagattttatagtgtatcaccaacacctaattt 37610680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52522090 - 52522127
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52522090 tctatcagattttatagtgtatcaccaacacctaattt 52522127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 24753318 - 24753266
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcat 174  Q
    |||||||||| ||||||||| |||| | |||||||||||||||||||||||||    
T  24753318 taaacctactctttaatcaccacacaactatcattgtcatcttcatctatcat 24753266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5689883 - 5689920
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  5689883 tctatcagattttatagtgtatcaccaacacttaattt 5689920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28777641 - 28777604
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28777641 tctatcagattttatagtgtatcatcaacacctaattt 28777604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31938261 - 31938224
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  31938261 tctataagattttatagtgtatcaccaacacctaattt 31938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35758168 - 35758205
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  35758168 tctatcagattttacagtgtatcaccaacacctaattt 35758205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35759185 - 35759148
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  35759185 tctatcagattttacagtgtatcaccaacacctaattt 35759148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43394007 - 43393970
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  43394007 tctatcagattttacagtgtatcaccaacacctaattt 43393970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46903578 - 46903541
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  46903578 tctattagattttatagtgtatcaccaacacctaattt 46903541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 53180758 - 53180721
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  53180758 tctatcagattgtatagtgtatcaccaacacctaattt 53180721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54354345 - 54354308
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  54354345 tctatcagattttacagtgtatcaccaacacctaattt 54354308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 55210059 - 55210104
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcat 167  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||    
T  55210059 taaacctactatttaatcactacaccaccatctttgtcatcttcat 55210104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 11348315 - 11348271
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttca 166  Q
    |||||||||||||||||||||||||||  ||||||||| ||||||    
T  11348315 taaacctactatttaatcactacaccaccatcattgtcttcttca 11348271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 5691049 - 5691014
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaat 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  5691049 tctatcagattttacagtgtatcaccaacacctaat 5691014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 17116368 - 17116402
Alignment:
Q  4 atcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||| ||||||||||||||||||||||||||||    
T  17116368 atcagagtttatagtgtatcaccaacacctaattt 17116402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2233259 - 2233222
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  2233259 tctataagattttatagcgtatcaccaacacctaattt 2233222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28776612 - 28776649
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  28776612 tctatcagattttataatgtatcatcaacacctaattt 28776649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43392770 - 43392807
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  43392770 tctatcagattttatagtgtaccaccaacaccaaattt 43392807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46902495 - 46902532
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  46902495 tctatcagattttatagtgtatcactaacaccaaattt 46902532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47429786 - 47429823
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  47429786 tctattagattttatagtgtatcaccaacatctaattt 47429823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47431141 - 47431104
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  47431141 tctattagattttatagtgtatcacccacacctaattt 47431104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 53764914 - 53764951
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  53764914 tctatcagattttatggtgtatcaccaacacttaattt 53764951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 55209945 - 55209982
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  55209945 tctatcagaatttatagtgtattaccaacacctaattt 55209982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55210862 - 55210825
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  55210862 tctatcagattttataatgtatcaccaacacataattt 55210825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 39133396 - 39133448
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcat 174  Q
    |||| ||||||||||||||| |||| |  ||||| ||||||||||||||||||    
T  39133396 taaatctactatttaatcaccacacaaccatcatcgtcatcttcatctatcat 39133448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 308 - 433
Target Start/End: Complemental strand, 48081192 - 48081067
Alignment:
Q  308 gttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaagcatttcacaaaaacagtagca 407  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  48081192 gttatacacagtggagtatacaagaatcaacaattacagaaaacaatcttttaacggtgattgaattgaatcaaacaagcatttcacaaaaacagtaaca 48081093  T
Q  408 ataacttcttaacttcaacaaccatg 433  Q
    |||||| |||||||||||||||||||    
T  48081092 ataactccttaacttcaacaaccatg 48081067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 18091867 - 18091955
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  18091867 taaacctactatttaatcactacaccaccatcattgacatcttcatctatcatcatcaacaccctccaatcactccaccataaccatcc 18091955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 34095499 - 34095432
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcca 189  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | |||||||||    
T  34095499 taaacctactatttcatcactacaccactatcattgtcatcttcatctatcatcatcaccaccctcca 34095432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 38032256 - 38032189
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcca 189  Q
    |||||| | ||||||||||||||||||  ||||||||||||||||| ||||||||| ||||| |||||    
T  38032256 taaaccaattatttaatcactacaccaccatcattgtcatcttcatttatcatcatcaacacactcca 38032189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18091744 - 18091781
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18091744 tctatcagattttatagtgtatcaccaacacctaattt 18091781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 2293262 - 2293201
Alignment:
Q  126 cctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctc 187  Q
    |||||| ||||||||  |||| |  ||||||||||||||||||||||||||| |||||||||    
T  2293262 cctactctttaatcatcacacaaccatcattgtcatcttcatctatcatcataaacaccctc 2293201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7261497 - 7261460
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  7261497 tctataagattttatagtgtatcaccaacacctaattt 7261460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8814298 - 8814335
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  8814298 tctatcagattttatagtgtaacaccaacacctaattt 8814335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8815311 - 8815274
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8815311 tctatcagattttatagtgtatcaccaacaccaaattt 8815274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17356525 - 17356558
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacaccta 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17356525 tctatcagattttatagtgtatcaccaacaccta 17356558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23757924 - 23757887
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  23757924 tctatcagattttatggtgtatcaccaacacctaattt 23757887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34095613 - 34095576
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34095613 tctatcagattttatagtgtatcacccacacctaattt 34095576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35927070 - 35927033
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  35927070 tctaccagattttatagtgtatcaccaacacctaattt 35927033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36074748 - 36074711
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  36074748 tctatcatattttatagtgtatcaccaacacctaattt 36074711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38031332 - 38031369
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38031332 tctatcagattttatagtgtatcatcaacacctaattt 38031369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38032374 - 38032337
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38032374 tctatcagattttatagtgtatcatcaacacctaattt 38032337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 56234975 - 56234938
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  56234975 tctatcagattttataatgtatcaccaacacctaattt 56234938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 10803179 - 10803225
Alignment:
Q  126 cctactatttaatcactacaccaatatcattgtcatcttcatctatc 172  Q
    |||||| ||||||||||||| ||  ||||||||||||||||||||||    
T  10803179 cctactgtttaatcactacatcaccatcattgtcatcttcatctatc 10803225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5433361 - 5433324
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  5433361 tctatcagattttataatgtatcacaaacacctaattt 5433324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22622031 - 22622068
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  22622031 tctatcagattttatagtgtatcaccgacaccgaattt 22622068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22623097 - 22623060
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  22623097 tctatcagattttataatgtatcaccaacatctaattt 22623060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35925855 - 35925892
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||  |||||||||||||    
T  35925855 tctatcagattttatagtgtatcgtcaacacctaattt 35925892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 48080526 - 48080489
Alignment:
Q  427 aaccatggcagcatcttctccaacatcctcattctact 464  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  48080526 aaccatggcatcatcttctctaacatcctcattctact 48080489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 52759650 - 52759738
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  52759650 taaacctactatttaatcactacaccaccatcattgacatcttcatctatcatcatcaacaccctccaatcactccaccataaccatcc 52759738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 36808319 - 36808393
Alignment:
Q  311 atacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaa 385  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||||| || |||||||||||||||||||||||    
T  36808319 atacacaatggagtatacaagaatcaacaattacacagaacaatctttcaagagtgattgaattgaatcaaacaa 36808393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 17244467 - 17244531
Alignment:
Q  124 aacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcc 188  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||||||    
T  17244467 aacctactatttaatcactacatcaccatcattgtcatcttcatctatcatcatcaacaccctcc 17244531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 7111315 - 7111248
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcca 189  Q
    |||||| | ||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||    
T  7111315 taaaccaattatttaatcactacaccaccatcattgtcatcttcatctatcatcatcaacacactcca 7111248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 51468732 - 51468673
Alignment:
Q  125 acctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacacc 184  Q
    ||||| ||||||||||||||||||  ||||||||||||||||||||||||||| ||||||    
T  51468732 acctattatttaatcactacaccatcatcattgtcatcttcatctatcatcatcaacacc 51468673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47533808 - 47533771
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47533808 tctatcagattttatagtgtatcaccaacacctaattt 47533771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52759527 - 52759564
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52759527 tctatcagattttatagtgtatcaccaacacctaattt 52759564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 52761550 - 52761513
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52761550 tctatcagattttatagtgtatcaccaacacctaattt 52761513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1823250 - 1823215
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  1823250 tctatcagattttatagtgtatcaccaacacctaat 1823215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5488665 - 5488704
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaatttgt 40  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  5488665 tctatcagattttatagtgtatcaccaacacgtaatttgt 5488704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5488821 - 5488784
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  5488821 tctatcaaattttatagtgtatcaccaacacctaattt 5488784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7111429 - 7111392
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7111429 tctatcagattttatagtgtatcatcaacacctaattt 7111392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21203175 - 21203212
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  21203175 tctatcagattttatagtgtatcatcaacacctaattt 21203212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50484950 - 50484913
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  50484950 tctatcagattttacagtgtatcaccaacacctaattt 50484913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51468503 - 51468540
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||||||||| |||||    
T  51468503 tctatcagattttatagtgtatcaccaacacccaattt 51468540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 51693311 - 51693348
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  51693311 tctatcggattttatagtgtatcaccaacacctaattt 51693348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 18819428 - 18819460
Alignment:
Q  3 tatcagattttatagtgtatcaccaacacctaa 35  Q
    |||||||||||||||||||||||||||||||||    
T  18819428 tatcagattttatagtgtatcaccaacacctaa 18819460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40187766 - 40187800
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaa 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  40187766 tctatcagattttatcgtgtatcaccaacacctaa 40187800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 51218709 - 51218647
Alignment:
Q  126 cctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcc 188  Q
    |||||| ||||||||  |||| |  ||||||||||||||||||||||| ||| ||||||||||    
T  51218709 cctactctttaatcatcacacaaccatcattgtcatcttcatctatcagcatcaacaccctcc 51218647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7110390 - 7110427
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  7110390 tctatcagattttatagtgtatcatcaacgcctaattt 7110427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38235104 - 38235067
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  38235104 tctataagattttacagtgtatcaccaacacctaattt 38235067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45229557 - 45229520
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| || ||||||||||||||||||    
T  45229557 tctatcagattttataatggatcaccaacacctaattt 45229520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51468855 - 51468818
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  51468855 tctattagattttacagtgtatcaccaacacctaattt 51468818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 9392637 - 9392549
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| ||||  ||||||||| ||||    
T  9392637 taaacctactatttaatcactacaccatcatcattgtcatcttcatctatcatcatcaacaccctccaatcacctcaccataacgatcc 9392549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 464
Target Start/End: Complemental strand, 18852157 - 18852078
Alignment:
Q  385 agcatttcacaaaaacagtagcaataacttcttaacttcaacaaccatggcagcatcttctccaacatcctcattctact 464  Q
    |||||| ||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  18852157 agcattgcacaacaacagtagcaatcactccttaacttcaacaaccatggcagcatcttctctaacatcctcattctact 18852078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 43114919 - 43114830
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcact-ccaccataaccatcc 210  Q
    |||||||||||||||||||||||||||  |||||| ||||||| |||||||||||| ||||||||||| ||||| |||||||||||||||    
T  43114919 taaacctactatttaatcactacaccaccatcattatcatctttatctatcatcatcaacaccctccaatcactcccaccataaccatcc 43114830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 12630841 - 12630935
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgt------catcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||||||||||||||||||||  ||||||||      ||||| ||||||||||||| ||||||||||| ||||||||||||||||||||    
T  12630841 taaacctactatttaatcactacaccatcatcattgttaactacatctacatctatcatcatcaacaccctccaatcactccaccataaccatcc 12630935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 29186959 - 29187029
Alignment:
Q  140 actacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||  |||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  29186959 actacaccaccatcattttcatcttcatctatcatcatcaacaccctccaatcactccatcataaccatcc 29187029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 37236078 - 37236140
Alignment:
Q  126 cctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcc 188  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||||||||    
T  37236078 cctactatttaatcactacatcaccatcattgtcatcttcatctatcatcatcaacaccctcc 37236140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 13599101 - 13599036
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctc 187  Q
    ||||||||||||||||| |||||||||  |||||||||| |||||||||||||||| |||||||||    
T  13599101 taaacctactatttaattactacaccaccatcattgtcaacttcatctatcatcatcaacaccctc 13599036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 35314992 - 35314930
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacacc 184  Q
    |||||||||||||||||||| |||| |  ||||||||||||||||||||| ||||| ||||||    
T  35314992 taaacctactatttaatcaccacacaaccatcattgtcatcttcatctataatcatcaacacc 35314930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29186828 - 29186865
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29186828 tctatcagattttatagtgtatcaccaacacctaattt 29186865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32518576 - 32518613
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32518576 tctatcagattttatagtgtatcaccaacacctaattt 32518613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44748517 - 44748480
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44748517 tctatcagattttatagtgtatcaccaacacctaattt 44748480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7011798 - 7011835
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  7011798 tctataagattttatagtgtatcaccaacacctaattt 7011835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7027156 - 7027193
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  7027156 tctataagattttatagtgtatcaccaacacctaattt 7027193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13597307 - 13597344
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  13597307 tctataagattttatagtgtatcaccaacacctaattt 13597344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18788514 - 18788477
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18788514 tctatcagattttataatgtatcaccaacacctaattt 18788477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19217791 - 19217828
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  19217791 tctatcggattttatagtgtatcaccaacacctaattt 19217828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29187984 - 29187947
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  29187984 tctatcagattttatagtgcatcaccaacacctaattt 29187947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 37237182 - 37237145
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37237182 tctatcagattttatagtgtatgaccaacacctaattt 37237145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43113838 - 43113875
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  43113838 tctatcagattttatagtgtatcaccagcacctaattt 43113875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43961097 - 43961134
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  43961097 tctatcagattttatagtgtatcactaacacctaattt 43961134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44417621 - 44417658
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  44417621 tctatcagattttatagtctatcaccaacacctaattt 44417658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45399964 - 45399927
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  45399964 tctatcagattttatagtgtatcactaacacctaattt 45399927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9391683 - 9391720
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  9391683 tctatcagattttatagtgtatcatcaacaccaaattt 9391720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9392769 - 9392732
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  9392769 tctatcagattttatagtgtatcaccggcacctaattt 9392732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13599211 - 13599174
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  13599211 tctatcagattttatagtgtatcagtaacacctaattt 13599174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26005515 - 26005552
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  26005515 tctataagattttatagtgtatcaccaacacgtaattt 26005552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27072608 - 27072571
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  27072608 tctataagattttatagtttatcaccaacacctaattt 27072571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27205705 - 27205742
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  27205705 tctataagattttatagtctatcaccaacacctaattt 27205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43962523 - 43962486
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  43962523 tctatcagattttatagtatatcactaacacctaattt 43962486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44231815 - 44231778
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  44231815 tctaccagattttatagtgtatcaccaacacctgattt 44231778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 9357745 - 9357713
Alignment:
Q  6 cagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||||||||||||||||||||||    
T  9357745 cagatcttatagtgtatcaccaacacctaattt 9357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 13278071 - 13277984
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatc 209  Q
    ||||||||||||||||| |||||||||  |||||||||||||| ||||||||| |  ||||||||| | |||||||||||||||||||    
T  13278071 taaacctactatttaataactacaccaccatcattgtcatctttatctatcatgagcaacaccctctaatcactccaccataaccatc 13277984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 13277877 - 13277804
Alignment:
Q  305 ttcgttatacacagtggagtatacaagaatcaacaattacataaaacaatcttttaacagtgattgaattgaatcaaacaag 386  Q
    |||||||||||||||||||||||||| |||||||||||||  ||||||||        ||||||||||||||||||||||||    
T  13277877 ttcgttatacacagtggagtatacaaaaatcaacaattaccgaaaacaat--------agtgattgaattgaatcaaacaag 13277804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 19229909 - 19229842
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcca 189  Q
    |||||| | ||||||||||||||||||  ||||||||||||||||| ||||||||| ||||| |||||    
T  19229909 taaaccaattatttaatcactacaccaccatcattgtcatcttcatttatcatcatcaacacactcca 19229842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12372478 - 12372515
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12372478 tctatcagattttatagtgtatcaccaacacctaattt 12372515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13278185 - 13278148
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13278185 tctatcagattttatagtgtatcaccaacacctaattt 13278148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4031985 - 4032022
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4031985 tctaccagattttatagtgtatcaccaacacctaattt 4032022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6803579 - 6803542
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  6803579 tctatcagattttatagtgtatcaccaacatctaattt 6803542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18654461 - 18654498
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  18654461 tctatcagattttacagtgtatcaccaacacctaattt 18654498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39350599 - 39350562
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  39350599 tctatcagattttacagtgtatcaccaacacctaattt 39350562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 39164219 - 39164255
Alignment:
Q  2 ctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||| ||||||||||||||||||||||||||||||    
T  39164219 ctatcaaattttatagtgtatcaccaacacctaattt 39164255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9083250 - 9083216
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaa 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  9083250 tctataagattttatagtgtatcaccaacacctaa 9083216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12373671 - 12373634
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| | |||||||||||||||||||||    
T  12373671 tctatcagattttacactgtatcaccaacacctaattt 12373634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19229002 - 19229039
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  19229002 tctattagattttatagtgtatcatcaacacctaattt 19229039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 9244360 - 9244430
Alignment:
Q  140 actacaccaatatcattgtcatcttcatctatcatcatgaacaccctccactcactccaccataaccatcc 210  Q
    |||||||||  |||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  9244360 actacaccaccatcattttcatcttcatctatcatcatcaacaccctccaatcactccatcataaccatcc 9244430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9244229 - 9244266
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9244229 tctatcagattttatagtgtatcaccaacacctaattt 9244266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9245385 - 9245348
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9245385 tctatcagattttatagtgtatcaccaacacctaattt 9245348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 39325583 - 39325519
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccct 186  Q
    |||||||||  ||||||||| |||| |  ||||||||||||||||||||||||||| ||||||||    
T  39325583 taaacctaccttttaatcaccacacaaccatcattgtcatcttcatctatcatcatcaacaccct 39325519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20309087 - 20309124
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  20309087 tctatcagattttatagtgtatcaccaatacctaattt 20309124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21095720 - 21095757
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  21095720 tctatcagattttatagtgtatcaccaatacctaattt 21095757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26364905 - 26364942
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26364905 tctatcagattttataatgtatcaccaacacctaattt 26364942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30640961 - 30640998
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  30640961 tctatcaaattttatagtgtatcaccaacacctaattt 30640998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41636995 - 41637032
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  41636995 tctatcagattttatcgtgtatcaccaacacctaattt 41637032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 44103007 - 44102970
Alignment:
Q  151 atcattgtcatcttcatctatcatcatgaacaccctcc 188  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  44103007 atcattgtcatcttcatctatcatcatcaacaccctcc 44102970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 522051 - 522014
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  522051 tctatcaaattttatagtgtatcaccaacccctaattt 522014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22012301 - 22012338
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  22012301 tctaccagattttatagtgtatcaccaacacctgattt 22012338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22013213 - 22013176
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  22013213 tctaccagattttatagtgtatcaccaacacctgattt 22013176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26366148 - 26366111
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  26366148 tctattagattttatagtgtatcaccaacacataattt 26366111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34642828 - 34642865
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  34642828 tctatcagattttatagtatatcaccaacatctaattt 34642865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 34643795 - 34643754
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatct 163  Q
    ||||||||||||||||||| |||||||  |||||||||||||    
T  34643795 taaacctactatttaatcattacaccaccatcattgtcatct 34643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34643919 - 34643882
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||| | ||||||||||||||||||||    
T  34643919 tctatcagattttatggcgtatcaccaacacctaattt 34643882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41638107 - 41638070
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||  |||||||||||||||||||||||||||||    
T  41638107 tctatcatgttttatagtgtatcaccaacacctaattt 41638070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0878 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0878
Description:

Target: scaffold0878; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2980 - 2943
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2980 tctatcagattttatagtgtatcaccaacacctaattt 2943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9321 - 9358
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9321 tctatcagattttatagtgtatcaccaacacctaattt 9358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31197 - 31234
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31197 tctatcagattttatagtgtatcaccaacacctaattt 31234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35239 - 35202
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  35239 tctatcagattttacagtgtatcaccaacacctaattt 35202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 83615 - 83578
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  83615 tctatcagattttatagtgtatcaccaacacctaattt 83578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 79573 - 79610
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  79573 tctatcagattttacagtgtatcaccaacacctaattt 79610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27719899 - 27719936
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27719899 tctatcagattttatagtgtatcaccaacacctaattt 27719936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34996715 - 34996678
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34996715 tctatcagattttatagtgtatcaccaacacctaattt 34996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 11801182 - 11801115
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccctcca 189  Q
    |||||| | |||||||| |||||||||  ||||||||||||||||||||| ||||| ||||| |||||    
T  11801182 taaaccaattatttaattactacaccaccatcattgtcatcttcatctataatcatcaacacactcca 11801115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 32348090 - 32348144
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcatctatcatca 176  Q
    |||||| | ||||||||||||||||||  ||||||||||||||||| ||||||||    
T  32348090 taaaccaattatttaatcactacaccaccatcattgtcatcttcatttatcatca 32348144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3000747 - 3000710
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  3000747 tctatcagattttatagtgtatcactaacacctaattt 3000710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21095333 - 21095296
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  21095333 tctaccagattttatagtgtatcaccaacacctaattt 21095296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32347972 - 32348009
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32347972 tctatcagattttatagtgtatcatcaacacctaattt 32348009  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32348991 - 32348954
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32348991 tctatcagattttatagtgtatcatcaacacctaattt 32348954  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34995515 - 34995552
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  34995515 tctatcagattttatagtgtatcaccaacatctaattt 34995552  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 21094575 - 21094606
Alignment:
Q  7 agattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||    
T  21094575 agattttatagtgtatcaccaacacctaattt 21094606  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32713837 - 32713800
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  32713837 tctataagattttacagtgtatcaccaacacctaattt 32713800  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27892290 - 27892253
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27892290 tctatcagattttatagtgtatcaccaacacctaattt 27892253  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16602889 - 16602926
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  16602889 tctatcagattttacagtgtatcaccaacacctaattt 16602926  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 14715062 - 14715099
Alignment:
Q  151 atcattgtcatcttcatctatcatcatgaacaccctcc 188  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  14715062 atcattgtcatctttatctatcatcatcaacaccctcc 14715099  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27891270 - 27891307
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||  |||||||||||||||||||||||    
T  27891270 tctatcagattttccagtgtatcaccaacacctaattt 27891307  T

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Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 12923 - 12870
Alignment:
Q  133 tttaatcactacaccaatatcattgtcatcttcatctatcatcatgaacaccct 186  Q
    |||||||||||||| |  |||||||||||||||||||||||| || ||||||||    
T  12923 tttaatcactacacaaccatcattgtcatcttcatctatcattatcaacaccct 12870  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 104415 - 104452
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  104415 tctatcagattttatagtgtatcaccaacatctaattt 104452  T

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Target: scaffold1425 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 298 - 335
Alignment:
Q  1 tctatcagattttatagtgtatcaccaacacctaattt 38  Q
    |||||||||||||| || ||||||||||||||||||||    
T  298 tctatcagattttacagcgtatcaccaacacctaattt 335  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 41269 - 41314
Alignment:
Q  122 taaacctactatttaatcactacaccaatatcattgtcatcttcat 167  Q
    |||||||||||||||||||| |||| |  |||||||||||||||||    
T  41269 taaacctactatttaatcaccacacaaccatcattgtcatcttcat 41314  T

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