View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11229_low_5 (Length: 375)
Name: NF11229_low_5
Description: NF11229
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11229_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 8000140 - 8000487
Alignment:
| Q |
12 |
aagaaagaaacattaaatagcatggaacaatgtagaagatgatcaactattataatccggacattgttcatataaaagtttgaattatgagagctctgta |
111 |
Q |
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| T |
8000140 |
aagaaagaaacattaaatagcatggaacaatgtagaagatgatcaactattataatccggacattgttcatataaaagtctgaattatgagagctctgta |
8000239 |
T |
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| Q |
112 |
ctgttccttggtaggaaattgcaaaaaatgatggagttattaccgtaagatacataggaggatcatccatggaagtagtgcctaggattacttctctttt |
211 |
Q |
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| T |
8000240 |
ctgttccttggtaggaaattgcaaaaaatgatggagttattaccgtaagatacataggaggatcatccatggaagtagtgcctaggattacttctctttt |
8000339 |
T |
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| Q |
212 |
tagttttgttgtcagtttatgacaaacacgtagctgaaaataaaagtaataatatcataagatgggactacaattgcaacatcccgaatatggatgcaga |
311 |
Q |
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| T |
8000340 |
tagttttgttgtcagtttatgacaaacacgtagctgaaaataaaagtaataatatcataagatgggattacaaatgcaacatcccgaatatggatgcaga |
8000439 |
T |
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| Q |
312 |
agttctttatcaaattttacctcagatcgagtagccccgccaataata |
359 |
Q |
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| T |
8000440 |
agttctttatcaaattttacctcagatcgagtagccccgccaataata |
8000487 |
T |
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