View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1122_low_10 (Length: 269)
Name: NF1122_low_10
Description: NF1122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1122_low_10 |
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| [»] scaffold0136 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 37180916 - 37181056
Alignment:
| Q |
1 |
actaatcctcgcattactctgcgtaaaacccttccacctattctcatccatcaatatctcaaacaaatccttcgccctacaattaaacttctccgtcatc |
100 |
Q |
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| T |
37180916 |
actaatcctcgcattactctgcgtaaaacccttccacctattctcatccatcaatatctcaaacaaatccttcgccctacaattaaacttctccgtcatc |
37181015 |
T |
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| Q |
101 |
acaatattcttccttcccttcttaatctccttcttcatctc |
141 |
Q |
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| T |
37181016 |
acaatattcttccttcccttcttaatctccttcttcttctc |
37181056 |
T |
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Target: scaffold0136 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 33273 - 33365
Alignment:
| Q |
1 |
actaatcctcgcattactctgcgtaaaacccttccacctattctcatccatcaatatctcaaacaaatccttcgccctacaattaaacttctc |
93 |
Q |
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| T |
33273 |
actaatcctagcattactctgcgtaaaacccttccatctattctcatccatcataatctcaaacaaatccttagccctacaattaaacttctc |
33365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 269
Target Start/End: Complemental strand, 25467272 - 25467244
Alignment:
| Q |
241 |
agcacatccttttccttgttttgaagatc |
269 |
Q |
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| T |
25467272 |
agcacatccttttccttgttttgaagatc |
25467244 |
T |
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