View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1122_low_2 (Length: 441)
Name: NF1122_low_2
Description: NF1122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1122_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 96 - 441
Target Start/End: Complemental strand, 13923508 - 13923163
Alignment:
| Q |
96 |
gtatttacttacctcttgtgcttccttggtggttgcttctcagacttctttgtggttggatccgcacgaatggcagcacgcaccttttttgtatcgttcc |
195 |
Q |
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| T |
13923508 |
gtatttacttacctcttgtgcttccttggtggttgcttctcagacttctttgtggttggatccgcacgaatggaagcacgcaccttttttgtatcgttcc |
13923409 |
T |
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| Q |
196 |
tcaatcccaccagcctctatcccatgcttgatacattcactgaagtgtgactggtatttatctggttcatcttccatcaacacctacaatgaataccgta |
295 |
Q |
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| T |
13923408 |
tcaatcccactagcctctatcccatgcttgatatattcactgaagtgcgactggtatttatctggttcatcttccatcaacacctacaatgaataccata |
13923309 |
T |
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| Q |
296 |
aagtataaaggttgtaaccaaaatttctagatacctttataatgaatgcacaaaaaataaggagaacaaagtacaattttcccacttgccttcatatagt |
395 |
Q |
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| T |
13923308 |
aagtataaaggttgtaaccaaaatttctagatacctttataaagaatgcactaaaaataaggagaacaaagtacaattttcccacttgccttcatatagt |
13923209 |
T |
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| Q |
396 |
aagcaacatgtccaccgaagatatttttacggcgagcctcaacatc |
441 |
Q |
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| T |
13923208 |
aagcaacatgtccaccgaagatatttttacggcgagcctcagcatc |
13923163 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 275
Target Start/End: Original strand, 55232505 - 55232674
Alignment:
| Q |
105 |
tacctcttgtgcttccttggtggttgcttctcagacttctttgtggttggatccgcacgaatggcagcacgcaccttttttgtatcgttcctcaatccca |
204 |
Q |
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| T |
55232505 |
tacctcttgtgttcctttggtggctgcttctcaggctttttgattgagggatctgcacgaattgcagcatgaaccttttt-gtatagttcctcgattcca |
55232603 |
T |
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| Q |
205 |
ccagcctctatcccatgcttgatacattcactgaagtgtgactggtatttatctggttcatcttccatcaa |
275 |
Q |
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| T |
55232604 |
tccgcttcaattccacgcttgatatattcactgaaatgggtttgatatttttcaggttcgtcttccatcaa |
55232674 |
T |
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