View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1122_low_3 (Length: 363)
Name: NF1122_low_3
Description: NF1122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1122_low_3 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0259 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 86 - 363
Target Start/End: Complemental strand, 44810992 - 44810715
Alignment:
| Q |
86 |
tacagatggttgtgagagtggatccttctgtttctgcttgttcaattggtcaagaaacagcaaataacaactttctgctctatcttcatccctcaccttt |
185 |
Q |
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| T |
44810992 |
tacagatggttgtgagagtggatccttctgtttctgcttgttcaattggtcaagaaacagcaaataacaactttctgctctatcttcatccctcaccttt |
44810893 |
T |
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| Q |
186 |
ggaacatcttcgtcttgaagtgtattctctttacctctcttcatcaatgaattcagccaccaaaatgacatcctactgaaaaatccagcttcggcaaaca |
285 |
Q |
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| T |
44810892 |
ggaacatcttcgtcttgaagtgtattctctttacctctcttcatcaatgaattcagccaccaaaatgacatcctactgaaaaatccagcttcggcaaaca |
44810793 |
T |
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| Q |
286 |
gcgtcacacggcaaacagaatcatttttattcaactcaccatttaaaggagcgtaaaggctttcatcgatttctctgt |
363 |
Q |
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| T |
44810792 |
gtgtcacacggcaaacagaatcatttttattcaactcaccatttaaaggagcgtaaaggctttcatcgatttctctgt |
44810715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 15692144 - 15692007
Alignment:
| Q |
89 |
agatggttgtgagagtggatccttctgtttctgcttgttcaattggtcaagaaacagcaaataacaactttctgctctatcttcatccctcacctttgga |
188 |
Q |
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| T |
15692144 |
agatggttgtgaggatggatccttatgtttctgcttgttcaattgatctagaaatagcgaataacaagtttctgctctatcttcctccctcaattttagc |
15692045 |
T |
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| Q |
189 |
acatcttcgtcttgaagtgtattctctttacctctctt |
226 |
Q |
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| T |
15692044 |
acatcttcgtcccgaagtgttttctctttacctatctt |
15692007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 272
Target Start/End: Original strand, 15972 - 16021
Alignment:
| Q |
223 |
tcttcatcaatgaattcagccaccaaaatgacatcctactgaaaaatcca |
272 |
Q |
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| T |
15972 |
tcttcatcaatgaattcagccaccaaaatgacatcctactgaagaatcca |
16021 |
T |
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