View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1122_low_4 (Length: 350)
Name: NF1122_low_4
Description: NF1122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1122_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 1006712 - 1006890
Alignment:
| Q |
1 |
taattcttgtagccacaacctatgggcacctctcttggccgagatttgaactttggttcgccaagttgtgggagtttaacccctgatggtagttacccac |
100 |
Q |
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| T |
1006712 |
taattcttgtagccacaacctatgggcacctctcttggccgagatttgaactttggttcgccaagttgtgggagtctaacccctgatggtagttacccac |
1006811 |
T |
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| Q |
101 |
attttagagtattttgttgtaactaattaatttatttgataggttagtacaacataaatgcaattgcaatacaaacatt |
179 |
Q |
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| T |
1006812 |
attttagagtattttgttgtaactaattaattaatttgatagattagtacaacataaatgcaattgcaatacaaacatt |
1006890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 209 - 337
Target Start/End: Original strand, 1006886 - 1007014
Alignment:
| Q |
209 |
acatttaactatattaaagaagtttgaaattcaaaaagtaaaacgcaataaatatgttgtgcatgagattcctacaagttgaattgaaagagaaagtgat |
308 |
Q |
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| T |
1006886 |
acatttaactagattaaagaagtttgaaattcaaaaagtaaaacgcaataaatatgttgtgcatgcgattcctacaagttgaattgaaagagaaacagat |
1006985 |
T |
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| Q |
309 |
atgaaaacaaaaattgaaaaggaatagaa |
337 |
Q |
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| T |
1006986 |
atgaaaacaaaaattgaaaaggaatagaa |
1007014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 54309463 - 54309431
Alignment:
| Q |
43 |
gatttgaactttggttcgccaagttgtgggagt |
75 |
Q |
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| T |
54309463 |
gatttgaactttggttagccaagttgtgggagt |
54309431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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