View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1122_low_5 (Length: 317)

Name: NF1122_low_5
Description: NF1122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1122_low_5
NF1122_low_5
[»] chr8 (11 HSPs)
chr8 (28-221)||(2711615-2711808)
chr8 (28-222)||(2988931-2989125)
chr8 (28-180)||(3142536-3142691)
chr8 (29-196)||(9851454-9851624)
chr8 (55-190)||(2916491-2916626)
chr8 (135-222)||(3002021-3002108)
chr8 (28-103)||(3001947-3002022)
chr8 (29-204)||(2911477-2911652)
chr8 (28-120)||(2980019-2980111)
chr8 (28-196)||(13790877-13791045)
chr8 (131-196)||(3282852-3282917)
[»] chr6 (1 HSPs)
chr6 (28-222)||(18355328-18355522)
[»] chr1 (1 HSPs)
chr1 (27-222)||(10755988-10756183)
[»] scaffold0065 (2 HSPs)
scaffold0065 (29-204)||(45045-45223)
scaffold0065 (38-216)||(50223-50404)
[»] chr4 (1 HSPs)
chr4 (27-182)||(8572637-8572792)
[»] chr3 (1 HSPs)
chr3 (27-182)||(28698597-28698752)
[»] chr7 (1 HSPs)
chr7 (34-222)||(3919480-3919671)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 28 - 221
Target Start/End: Complemental strand, 2711808 - 2711615
Alignment:
Q  28 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactggg 127  Q
    |||||||||||||  || ||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  2711808 gatgaattggaaatactcaagaacacagttgaatccatcaaagctgtcctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaaaactggg 2711709  T
Q  128 ttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataa 221  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||    
T  2711708 ttagaaggctcaaagatgtgcttcttcctgctgatgatttgatagatgagtttcttattgaagatatgatacataaaagggataaagctcataa 2711615  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 2988931 - 2989125
Alignment:
Q  28 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactggg 127  Q
    |||||||| ||||| ||||| |||||| |||||  ||||| |||||| |||||| ||||||| |||||||||||| |||||| ||||||||||  |||||    
T  2988931 gatgaattagaaagacttaaaaacacaattgaagtcatcagagctgtactccttgatgctgaggagaaacaagagaaaagtcctgctgtacaagtctggg 2989030  T
Q  128 ttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataag 222  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||    
T  2989031 taagaaggctcaaagacgtgcttcttcctgcagatgatttgatagatgagtttcttattgaagatatgatacacaaacgggataaagctcataag 2989125  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 3142691 - 3142536
Alignment:
Q  28 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactggg 127  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||     
T  3142691 gatgaactggaaaggcttaaaaacacagttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctgga 3142592  T
Q  128 ttagaaggctcaaa---gacgtgcttcttcctgctgatgatttgatagatgaattt 180  Q
    | ||||| ||||||   || || |||| |||||||||||| ||| |||||||||||    
T  3142591 taagaagactcaaagatgatgtacttcatcctgctgatgacttgctagatgaattt 3142536  T

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Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 9851624 - 9851454
Alignment:
Q  29 atgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagag---caaagtcatgctgtacaaaactg 125  Q
    |||||||||||| |||||||||||| |||||||| || | || |||||||||| |||||||||||||||||||    |||| ||||||||| | ||| ||    
T  9851624 atgaattggaaaagcttaagaacacggttgaatctattagagttgtgctccttgatgctgaagagaaacaagaagcacaaaatcatgctgttcgaaattg 9851525  T
Q  126 ggttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatga 196  Q
    ||| |||||||||||||| ||||||| |||||| ||||||||| ||||||||||| |||||||||||||||    
T  9851524 ggtaagaaggctcaaagatgtgcttcatcctgcagatgatttgctagatgaatttgttattgaagatatga 9851454  T

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Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 2916626 - 2916491
Alignment:
Q  55 gttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagacgtgcttcttc 154  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||| ||||||| ||||| || ||||||| ||    
T  2916626 gttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgcttcatc 2916527  T
Q  155 ctgctgatgatttgatagatgaatttcttattgaag 190  Q
    |||||||||| ||| ||||||||||| |||||||||    
T  2916526 ctgctgatgacttgctagatgaatttgttattgaag 2916491  T

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Target: chr8; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 3002021 - 3002108
Alignment:
Q  135 gctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataag 222  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  3002021 gctcaaagacgtgcttcttcctgctgttgatttgatagatgagtttcttattgaagatatgatacacaaaagggataaagctgataag 3002108  T

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Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 3001947 - 3002022
Alignment:
Q  28 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  3001947 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagc 3002022  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 2911652 - 2911477
Alignment:
Q  29 atgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggt 128  Q
    |||| ||||||||||||||||| |||||||| || |||| |  ||| |||||| ||||||| || |||||||| ||||  ||||||||| |||||||| |    
T  2911652 atgagttggaaaggcttaagaatacagttgagtctatcagaaatgtactccttgatgctgaggacaaacaagaacaaaaccatgctgtaaaaaactggat 2911553  T
Q  129 tagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaa 204  Q
    |||||| |||||||| |||||   |  ||||||  | ||| ||||||||||| ||||||||||| ||| |||||||    
T  2911552 tagaagactcaaagatgtgctgaattttgctgacaacttgctagatgaatttgttattgaagatttgagacacaaa 2911477  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 2980019 - 2980111
Alignment:
Q  28 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaa 120  Q
    |||||||| ||||| ||||| |||||| |||||  ||||| |||||| |||||| ||||||| |||||||||||| |||||||||||||||||    
T  2980019 gatgaattagaaagacttaaaaacacaattgaagtcatcagagctgtactccttgatgctgaggagaaacaagagaaaagtcatgctgtacaa 2980111  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 13790877 - 13791045
Alignment:
Q  28 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactggg 127  Q
    ||||| |||||||| ||||||||| | ||||||| | | | || |||||||||| | ||  | || ||||| || |||| |  || |||||| || |||     
T  13790877 gatgagttggaaagacttaagaactctgttgaatgcgtaagagttgtgctccttgacgcccaggataaacaggaacaaaattttgttgtacagaattgga 13790976  T
Q  128 ttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatga 196  Q
    | |||||||||| ||| ||||||| || ||| ||||| ||| ||||||||||| ||||||||| |||||    
T  13790977 taagaaggctcacagatgtgcttcatcttgcagatgacttgctagatgaatttattattgaaggtatga 13791045  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 3282917 - 3282852
Alignment:
Q  131 gaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatga 196  Q
    ||||||||||||| ||||||| || ||| ||||| ||| ||||||||||  ||||||||| |||||    
T  3282917 gaaggctcaaagatgtgcttcatcttgcagatgacttgctagatgaattcattattgaaggtatga 3282852  T

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Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 28 - 222
Target Start/End: Original strand, 18355328 - 18355522
Alignment:
Q  28 gatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactggg 127  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||||    
T  18355328 gatgaactggaaaggcttaagaagacagttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaactctggg 18355427  T
Q  128 ttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataag 222  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  18355428 ttagaaggctcaacgacctgcttcttcctgcagatgatttgatagatgaattttttattgaagatatgatacacaaaagggataaagctcataag 18355522  T

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Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 10756183 - 10755988
Alignment:
Q  27 agatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgg 126  Q
    ||||||||| ||||| |||| ||| |||||||||||||||| ||||||||||||| |||||||  | ||||||||| |||||| |  |||||||||||||    
T  10756183 agatgaattagaaagccttacgaagacagttgaatccatcagagctgtgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgg 10756084  T
Q  127 gttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataag 222  Q
    |||| |||||||||||| |||||| || |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |||||    
T  10756083 gttacaaggctcaaagatgtgcttgttgctgcagatgatttgatagatgaatttcttattgaagatatgatacgcaaaagggatgaagctcataag 10755988  T

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Target: scaffold0065 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 45045 - 45223
Alignment:
Q  29 atgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggt 128  Q
    |||| ||||||||||||||||| || ||||||||| ||| ||||||||||||| ||||||| ||||||||| | |||||||||| ||| ||||||||| |    
T  45045 atgagttggaaaggcttaagaatactgttgaatccgtcagagctgtgctccttgatgctgaggagaaacaacaacaaagtcatggtgtgcaaaactggat 45144  T
Q  129 tagaaggctcaaa---gacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaa 204  Q
     ||||| ||||||   || ||||||| |||||||||||||||| |||||||||||  ||||||||| |||| |||||||    
T  45145 aagaagactcaaagatgatgtgcttcatcctgctgatgatttgctagatgaattttctattgaagacatgagacacaaa 45223  T

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Target: scaffold0065; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 216
Target Start/End: Original strand, 50223 - 50404
Alignment:
Q  38 aaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaaggct 137  Q
    ||||||||||||| || ||||||||| ||  ||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||| | ||||| ||    
T  50223 aaaggcttaagaatactgttgaatccgtctgagctgtgctcctcgatgctgaagagaaacaagagcaaagtaatgctgtacaaatctggataagaagact 50322  T
Q  138 caaa---gacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagct 216  Q
    ||||   || || |||| |||||||||||| ||| ||||| ||||||||||||||||| ||| ||||||| ||||| |||||    
T  50323 caaagatgatgtacttcatcctgctgatgacttgctagataaatttcttattgaagatttgagacacaaacgagatgaagct 50404  T

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Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 8572637 - 8572792
Alignment:
Q  27 agatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgg 126  Q
    ||||||||| ||||| |||| ||| |||||||||||||||| ||||| ||||||| |||||||  | ||||||||| |||||| |  |||||||||||||    
T  8572637 agatgaattagaaagtcttacgaagacagttgaatccatcagagctgcgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgg 8572736  T
Q  127 gttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttct 182  Q
    |||| |||||||||||| |||||| || |||| |||||||||||||||||||||||    
T  8572737 gttacaaggctcaaagatgtgcttgttgctgcagatgatttgatagatgaatttct 8572792  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 28698597 - 28698752
Alignment:
Q  27 agatgaattggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgg 126  Q
    ||||||||| ||||| |||| ||| |||||||||||||||| ||||| ||||||| |||||||  | ||||||||| |||||| |  |||||||||||||    
T  28698597 agatgaattagaaagtcttacgaagacagttgaatccatcagagctgcgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgg 28698696  T
Q  127 gttagaaggctcaaagacgtgcttcttcctgctgatgatttgatagatgaatttct 182  Q
    |||| |||||||||||| |||||| || |||| |||||||||||||||||||||||    
T  28698697 gttacaaggctcaaagatgtgcttgttgctgcagatgatttgatagatgaatttct 28698752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 3919671 - 3919480
Alignment:
Q  34 ttggaaaggcttaagaacacagttgaatccatcaaagctgtgctcctttatgctgaagagaaacaagagcaaagtcatgctgtacaaaactgggttagaa 133  Q
    ||||||||||||||||  |||||| ||||||||| ||||||||||||| |||| || ||||||||| | |||| ||||| ||| ||||||||| | ||||    
T  3919671 ttggaaaggcttaagagtacagttcaatccatcagagctgtgctccttgatgccgaggagaaacaacaacaaaatcatggtgtgcaaaactggataagaa 3919572  T
Q  134 ggctcaaa---gacgtgcttcttcctgctgatgatttgatagatgaatttcttattgaagatatgatacacaaaagagataaagctgataag 222  Q
    ||||||||   || ||||||| |||||||||||| ||| | ||||||||| ||||| | ||||||| ||||||||  ||  |||||||||||    
T  3919571 ggctcaaagatgatgtgcttcatcctgctgatgacttgctcgatgaatttgttattcacgatatgagacacaaaattgaggaagctgataag 3919480  T

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