View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1122_low_6 (Length: 317)

Name: NF1122_low_6

Description: NF1122

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1122_low_6

[»] chr8 (3 HSPs)

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 94 - 181

Target Start/End: Original strand, 9674776 - 9674865

Alignment:

Q	94	agaaagagtgcatcatacatgaaagctccaattcaacaaattggacagactccatctg--tggtgctgctcatcaatccaaactttcaac	181	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9674776	agaaagagtgcatcatacacaaaagctccaattcaacaaattggacagactccatctgttttgttcctctcatcaatccaaactttcaac	9674865	T

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Target: chr8; HSP #2

Raw Score: 36; E-Value: 0.00000000003

Query Start/End: Original strand, 122 - 200

Target Start/End: Original strand, 9686969 - 9687052

Alignment:

Q	122	caattcaacaaattggacagactccatctgtggtgctg-----ctcatcaatccaaactttcaactcaactttcctattctcac	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	9686969	caattcaacaaaatgaacagactccatctgtattgttgttcctctcatcaatccaaactttcaacacagctttcctattctcac	9687052	T

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Target: chr8; HSP #3

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 198 - 247

Target Start/End: Original strand, 9684813 - 9684862

Alignment:

Q	198	cacagcttccccatacttagacttaataatctcaatcaactcgtgattca	247	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	9684813	cacagcttccccatacttagacttcacaatttcaatcagctcatgattca	9684862	T

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