View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1122_low_8 (Length: 313)
Name: NF1122_low_8
Description: NF1122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1122_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5531126 - 5530904
Alignment:
| Q |
1 |
aaatcaaaacatttagaatttgaacaaaggaggacaaaatataaaaaactttctgcttttatttctttcaaaaaacaacatcccttacatgatcaattga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5531126 |
aaatcaaaacatttagaatttgaacaaaggaggacaaaatatgaaaaactttctgcttttatttctttcaaaaaacaacatcccttacatgatcaattga |
5531027 |
T |
|
| Q |
101 |
agcattccatggaccaacatagttagcttcacacccattttgagtgtcactataaacccatttgtgaccattatctgctgcaactttccccactaatctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5531026 |
agcattccatggaccaacatagttagcttcacacccattttgagtgtcactataaacccatttgtgaccattatctgctgcaactttccccactaatctg |
5530927 |
T |
|
| Q |
201 |
cataatatttatatgcaatatat |
223 |
Q |
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||||||||||||||||||||||| |
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|
| T |
5530926 |
cataatatttatatgcaatatat |
5530904 |
T |
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