View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1122_low_9 (Length: 272)
Name: NF1122_low_9
Description: NF1122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1122_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 48 - 240
Target Start/End: Original strand, 12335190 - 12335376
Alignment:
| Q |
48 |
aagcttacaacatatactatttattctatagctacaaaagactaacttatccatatgtggtgaagctctattactttcctctacggcataaaaatgaaat |
147 |
Q |
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| T |
12335190 |
aagcttacaacatatactatttattctatagctacaaaagactaacttatccatatgtggtgaagctctattactttcctctacggcataaaaatgaaat |
12335289 |
T |
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| Q |
148 |
ggttgacataaatataaaatgattatactaaacttagttgcaattaagagacattggttactttaactataactagttgaacttgctattcat |
240 |
Q |
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| T |
12335290 |
ggttgacataaatataaaatgattatactaaacttagttgcaattaagagacattggttactt------taactagttgaacttgctattcat |
12335376 |
T |
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