View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11230_low_1 (Length: 328)
Name: NF11230_low_1
Description: NF11230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11230_low_1 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 157 - 328
Target Start/End: Original strand, 49971766 - 49971937
Alignment:
| Q |
157 |
aaacttccaacttagactgctgtcaattttaagtgaacactttgtaagatgctataaaagacattccggaacaatatctgggtcctcccaatgtgccctg |
256 |
Q |
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| T |
49971766 |
aaacttccaacttagactgctgtcaattttaagtgaacactttgtaagatgcgataaaagacatttcggaacaatatctgggtcctcccaatgtgccctg |
49971865 |
T |
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| Q |
257 |
cataannnnnnncctttatgattttcatcgaaattgagaatgagttgcgagaagaagagaatgattgtgacg |
328 |
Q |
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| T |
49971866 |
cataatttttttcctttatgattttcatcgaaattgagaatgagttgcgagaagaagaggatgattgtgacg |
49971937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 49971593 - 49971695
Alignment:
| Q |
32 |
agaacctgtggcagtattcaaataaataaaagttgacacactgttgaattccttgcgcacaaagataattccatgaacatttgttcttttgcatctgtat |
131 |
Q |
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| T |
49971593 |
agaacctgtggcagtatgcaaataaataaaagttgacacactgccgaattccttgcgcacaaagataattccatgaacatttggtgttttgcatctgtat |
49971692 |
T |
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| Q |
132 |
cta |
134 |
Q |
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| T |
49971693 |
cta |
49971695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 1999 - 2066
Alignment:
| Q |
47 |
attcaaataaataaaagttgacacactgttgaattccttgcgcacaaagataattccatgaacatttg |
114 |
Q |
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| T |
1999 |
attcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttg |
2066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 3545 - 3612
Alignment:
| Q |
47 |
attcaaataaataaaagttgacacactgttgaattccttgcgcacaaagataattccatgaacatttg |
114 |
Q |
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| T |
3545 |
attcaaataaataaaagttgacatgtgattgaattccttgggcacaaatataattccatgaacatttg |
3612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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