View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11230_low_3 (Length: 298)
Name: NF11230_low_3
Description: NF11230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11230_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 49972028 - 49972311
Alignment:
| Q |
1 |
attgaatgtcctagccgccggggggacatgattattgcaatatcatatgactcttgataagagtata----taaagaagagtcactcctcatcatacaaa |
96 |
Q |
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| T |
49972028 |
attgaatgtcctagccgccggggggacatgattattgcaatatcatatgactcttgataagagtatatatataaagaagagtcactcctcatcatacaaa |
49972127 |
T |
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| Q |
97 |
tcaattttcttctttatgtcttgcaactccctaacaatatatccctaacttgtcttgcaagtacgtataattgttattctagagcataaatacctactta |
196 |
Q |
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| T |
49972128 |
tcaattttcttctttatgtcttgcaactccctaacaatatatccctaacttgtcttgcatgtacgtataattgttattctagagcataaatacctactta |
49972227 |
T |
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| Q |
197 |
ggcccctctctatcaataaccgcatatacaaattcttaaacatatcctatacaggaacagccacacttcattgtccgctaacta |
280 |
Q |
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| T |
49972228 |
ggcccctctctatcaataaccgcatatacaaattcttaaacatatcctatacaggaacagccacacttcattgtccgctaacta |
49972311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 43288293 - 43288339
Alignment:
| Q |
49 |
gactcttgataagagtatataaagaagagtcactcctcatcatacaa |
95 |
Q |
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| T |
43288293 |
gactcttgataagagtttataaagaggaggcactcctcatcttacaa |
43288339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 8902382 - 8902424
Alignment:
| Q |
45 |
atatgactcttgataagagtatataaagaagagtcactcctca |
87 |
Q |
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| T |
8902382 |
atatgactcttgataagagtttataaagatgagacactcctca |
8902424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 10542137 - 10542092
Alignment:
| Q |
50 |
actcttgataagagtatataaagaagagtcactcctcatcatacaa |
95 |
Q |
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| T |
10542137 |
actcttgataagagtttataaagaggagacactcctcatcttacaa |
10542092 |
T |
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