View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11230_low_4 (Length: 261)
Name: NF11230_low_4
Description: NF11230
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11230_low_4 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: scaffold0095 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 27432 - 27217
Alignment:
| Q |
1 |
gaaaccttactcattcttcttctccacaagacaaagaccccaatttaagaaacaaaattagaaaattaaaaccatttttatttttcattccatgactgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27432 |
gaaaccttactcattcttcttctccacaagacaaagaccccaatttaagaaacaaaattagaaaattaaaaccatttttatttttcattccatggctgca |
27333 |
T |
|
| Q |
101 |
aacgaaacttcaccgtaagtactcactattttcatttccactcaccaactaattttcaaacaaaatatcatagaataatcaaaacctcaatttccacgaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
27332 |
aacgaaacttcaccgtaagtactcactcttttcatttccactcactaactaattttcaaacaaaacataatagaataatcaaaacctcaatttccacgaa |
27233 |
T |
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| Q |
201 |
aactctaaggttgttg |
216 |
Q |
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|||||||||||||||| |
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| T |
27232 |
aactctaaggttgttg |
27217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39403474 - 39403259
Alignment:
| Q |
1 |
gaaaccttactcattcttcttctccacaagacaaagaccccaatttaagaaacaaaattagaaaattaaaaccatttttatttttcattccatgactgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39403474 |
gaaaccttactcattcttcttctccacaagacaaagaccccaatttaagaaacaaaattagaaaattaaaaccatttttatttttcattccatggctgca |
39403375 |
T |
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| Q |
101 |
aacgaaacttcaccgtaagtactcactattttcatttccactcaccaactaattttcaaacaaaatatcatagaataatcaaaacctcaatttccacgaa |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
39403374 |
aacgaaacttcaccgtaagtactcactcttttcatttccactcactaactaattttcaaacaaaacataatagaataatcaaaacctcaatttccacgaa |
39403275 |
T |
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| Q |
201 |
aactctaaggttgttg |
216 |
Q |
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|||||||||||||||| |
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| T |
39403274 |
aactctaaggttgttg |
39403259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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