View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11231_high_4 (Length: 231)

Name: NF11231_high_4
Description: NF11231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11231_high_4
NF11231_high_4
[»] chr1 (1 HSPs)
chr1 (16-231)||(36314596-36314811)
[»] chr8 (19 HSPs)
chr8 (16-188)||(19390540-19390712)
chr8 (16-202)||(19345126-19345312)
chr8 (31-205)||(19504028-19504202)
chr8 (16-188)||(19337410-19337582)
chr8 (16-212)||(19410737-19410933)
chr8 (16-212)||(19457756-19457952)
chr8 (16-212)||(19523126-19523322)
chr8 (16-179)||(19469524-19469687)
chr8 (16-179)||(19540448-19540611)
chr8 (16-179)||(19592087-19592250)
chr8 (31-188)||(19355445-19355602)
chr8 (20-157)||(19468610-19468747)
chr8 (20-157)||(19555531-19555668)
chr8 (16-175)||(19376574-19376733)
chr8 (16-170)||(19172821-19172975)
chr8 (16-170)||(19287671-19287825)
chr8 (16-157)||(19404705-19404846)
chr8 (16-145)||(19370917-19371046)
chr8 (16-145)||(19341137-19341266)
[»] chr6 (1 HSPs)
chr6 (21-170)||(19543028-19543177)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 36314811 - 36314596
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36314811 tgaacatcaaaaaacgcgggaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccagtgaatgttcaacatatgtatca 36314712  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36314711 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatatgatgggagctatcctcgaagggcaagttaaca 36314612  T
Q  216 agtggtgatgaagaca 231  Q
    ||||||| ||||||||    
T  36314611 agtggtgttgaagaca 36314596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 19390540 - 19390712
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||||  |||||||||||| ||| |||||    
T  19390540 tgaacatcaagaaacgcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggtttattcgagaacattccggtgaatgttcaacgtatatatca 19390639  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg 188  Q
     ||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  19390640 atacattattgtctctaacaaggatgaagattcttttgctttcgaagttaaagatgggaagtttatacgatgg 19390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 19345126 - 19345312
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||| || |||||||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||||| ||| |||||    
T  19345126 tgaacatcaagaaaagcggcatagcgtattggaaaagcggaaaacttaatagcaatggaatattcgagaacattcccacgaaagttcaacgtatatatca 19345225  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaa 202  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||| | ||| |||||||    
T  19345226 gtacattattgtctctaacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaa 19345312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 31 - 205
Target Start/End: Complemental strand, 19504202 - 19504028
Alignment:
Q  31 gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc 130  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |  || ||||||| ||| ||||||||||||||||| ||    
T  19504202 gcggcaaagtgcattggaaaagcggaaaacttaaaagcaatggaatattcgagaacattcccacaaaagttcaacgtatatatcagtacattattgtctc 19504103  T
Q  131 taacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaaggg 205  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||| | ||| ||||||||||    
T  19504102 taacaagaatgaagattctttcgctttcgaagttaaagatgggaagtttgcacgatggcaactaacctcgaaggg 19504028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 19337410 - 19337582
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||  ||| | ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||   ||| ||||||| ||| || ||    
T  19337410 tgaacatcaggaaaagtggcaaagtgcattggaaaagtggaaaactcaaaagcaatggaatgttcgagaacattcctgcgaaagttcaacgtatatacca 19337509  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg 188  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  19337510 gtacattattgtgtctaacaaggatgaagattcttttgcttttgaagttaaagatgggaaatttatacgatgg 19337582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 19410737 - 19410933
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || ||||||    
T  19410737 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatca 19410836  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 212  Q
    |||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19410837 gtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19410933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 19457756 - 19457952
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || ||||||    
T  19457756 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatca 19457855  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 212  Q
    |||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19457856 gtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19457952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 19523322 - 19523126
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    |||||||||  || ||||||    
T  19523322 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaagtaggtatca 19523223  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 212  Q
    |||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19523222 gtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19523126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 19469687 - 19469524
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| ||||||    
T  19469687 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatca 19469588  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 179  Q
    |||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19469587 gtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19469524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 19540611 - 19540448
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| ||||||    
T  19540611 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatca 19540512  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 179  Q
    |||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19540511 gtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19540448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 19592087 - 19592250
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| ||| ||||||    
T  19592087 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaataggtatca 19592186  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaagttt 179  Q
    |||||||||||| ||||||||| |||||||||||||| | || |||||||||||||||||||||    
T  19592187 gtacattattgtctctaacaaggatgaagattctttcacgttcgaagttaaagatgggaagttt 19592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 188
Target Start/End: Original strand, 19355445 - 19355602
Alignment:
Q  31 gcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtacattattgtttc 130  Q
    ||||||||||| |||||||||| |||||||||| ||| |||||||| |||||||||||||||  ||| ||||||  ||| |||| |||||||||||| ||    
T  19355445 gcggcaaagtgcattggaaaagcggaaaacttagaagtaatggaatattcgagaacattccagcgaaagttcaaagtatatatcggtacattattgtgtc 19355544  T
Q  131 taacaagaatgaagattctttcgcttttgaagttaaagatgggaagtttatacgatgg 188  Q
    ||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||||||    
T  19355545 taacaaggatgaagattcttttgctttcgaagttaatgatgggaattttatacgatgg 19355602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 19468747 - 19468610
Alignment:
Q  20 catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac 119  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19468747 catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac 19468648  T
Q  120 attattgtttctaacaagaatgaagattctttcgcttt 157  Q
    |||||||| ||||||||  | |||||||||||| ||||    
T  19468647 attattgtctctaacaaagacgaagattctttcacttt 19468610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 19555668 - 19555531
Alignment:
Q  20 catcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtac 119  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||  ||||||||||||||||||||||||||    
T  19555668 catcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggtgaatgttcaacatatgtatcagtac 19555569  T
Q  120 attattgtttctaacaagaatgaagattctttcgcttt 157  Q
    |||||||| ||||||||  | |||||||||||| ||||    
T  19555568 attattgtctctaacaaagacgaagattctttcacttt 19555531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 19376574 - 19376733
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||    ||||||||| |||||||||     
T  19376574 tgaacatcaagaaaagcggcaaagtgtattggaaaagcggaaaacttaaaagcaatggattattcgagaatattccggccaatgttcaaaatatgtatcg 19376673  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagatgggaa 175  Q
    |||||| ||||| ||||||||| |||||||||| ||   ||||||| |||||||| ||||    
T  19376674 gtacatcattgtctctaacaaggatgaagattcctttagttttgaaattaaagatcggaa 19376733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 19172975 - 19172821
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||| | ||| ||||||||| | |||| ||||||||| |||||||    
T  19172975 tgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacttaacagcaatggattattcaagaacattctagtgaaagttcaacatgtgtatca 19172876  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 170  Q
     ||||||||||| ||||||||| ||||||| || ||| |||| ||| | ||||||    
T  19172875 atacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 19172821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 19287671 - 19287825
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||| || | |||||||  | ||||||||||||||| |||| ||||||| | |||||||    
T  19287671 tgaacatcaagcaacgcggcaaagtgtattggaaaagcggaaaacgtagacgcaatggtttattcgagaacattccagtgaaagttcaacgtgtgtatca 19287770  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 170  Q
     ||||||||||| ||||||||| ||||||| || ||| |||| ||| | ||||||    
T  19287771 atacattattgtctctaacaaggatgaagactccttcactttcgaaatcaaagat 19287825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 19404705 - 19404846
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    |||||||||| ||| | |||||||||||||||||||| ||||||||||||||| ||||| | |||||||| |||||    |||||||||  |||||||||    
T  19404705 tgaacatcaagaaaagaggcaaagtgtattggaaaagcggaaaacttaaaagcgatggattattcgagaatattccggccaatgttcaaactatgtatca 19404804  T
Q  116 gtacattattgtttctaacaagaatgaagattctttcgcttt 157  Q
     |||| |||||| ||||||||| |||||||||||||| ||||    
T  19404805 atacactattgtctctaacaaggatgaagattctttcacttt 19404846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 19370917 - 19371046
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    ||||||| || ||||  ||||||||| ||||||||||||||||||||| |||||||||| | |||||||||||||||  |||||| |||||| ||||||     
T  19370917 tgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttagaagcaatggattattcgagaacattccagagaatgtccaacatgtgtatcg 19371016  T
Q  116 gtacattattgtttctaacaagaatgaaga 145  Q
     ||||| ||||| ||||||||  |||||||    
T  19371017 atacatgattgtctctaacaaagatgaaga 19371046  T

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Target: chr8; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 19341137 - 19341266
Alignment:
Q  16 tgaacatcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatca 115  Q
    ||||||| || ||||  ||||||||| ||||||||||||||||||||  |||||||||| | ||||||||||||| |  |||||| |||||| ||||||     
T  19341137 tgaacattaagaaacaaggcaaagtgcattggaaaagtggaaaacttggaagcaatggattattcgagaacattctagagaatgtccaacatgtgtatcg 19341236  T
Q  116 gtacattattgtttctaacaagaatgaaga 145  Q
     ||||| ||||| ||||||||  |||||||    
T  19341237 atacatgattgtctctaacaaagatgaaga 19341266  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 19543028 - 19543177
Alignment:
Q  21 atcaaaaaacgcggcaaagtgtattggaaaagtggaaaacttaaaagcaatggaatgttcgagaacattccaatgaatgttcaacatatgtatcagtaca 120  Q
    ||||| ||| |||||||||||||||||||||| |||||||||| ||| |||||  | |||| |||||| ||   ||||||||||| | ||||| | ||||    
T  19543028 atcaagaaaagcggcaaagtgtattggaaaagcggaaaacttagaagaaatgggttattcgtgaacataccggcgaatgttcaacgtgtgtatgaataca 19543127  T
Q  121 ttattgtttctaacaagaatgaagattctttcgcttttgaagttaaagat 170  Q
    ||||||||||||| ||  |||||||||| ||  ||||| || ||||||||    
T  19543128 ttattgtttctaagaaagatgaagattcctttacttttaaaattaaagat 19543177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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