View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11232_low_1 (Length: 407)

Name: NF11232_low_1
Description: NF11232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11232_low_1
NF11232_low_1
[»] chr6 (13 HSPs)
chr6 (2-392)||(176335-176725)
chr6 (59-128)||(7564504-7564573)
chr6 (179-289)||(1453677-1453787)
chr6 (179-289)||(1465369-1465479)
chr6 (330-382)||(1442096-1442148)
chr6 (57-117)||(1459275-1459340)
chr6 (216-289)||(1459403-1459476)
chr6 (328-392)||(7564737-7564801)
chr6 (93-128)||(370569-370604)
chr6 (339-374)||(370782-370817)
chr6 (345-392)||(1470926-1470973)
chr6 (59-128)||(1453587-1453656)
chr6 (59-128)||(1465279-1465348)
[»] chr3 (3 HSPs)
chr3 (334-382)||(2442050-2442098)
chr3 (332-389)||(4142124-4142181)
chr3 (337-389)||(4157939-4157991)
[»] chr4 (2 HSPs)
chr4 (332-392)||(55419783-55419843)
chr4 (57-98)||(55420068-55420109)
[»] chr7 (1 HSPs)
chr7 (340-391)||(3927061-3927112)
[»] chr2 (3 HSPs)
chr2 (339-382)||(6538845-6538888)
chr2 (340-389)||(7160752-7160801)
chr2 (340-389)||(7168688-7168737)
[»] chr5 (2 HSPs)
chr5 (337-382)||(23766857-23766902)
chr5 (337-382)||(23816705-23816750)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 2 - 392
Target Start/End: Complemental strand, 176725 - 176335
Alignment:
Q  2 taatgaacatagaaccaacataaaataaattaaataataaacggaaacaccacaggaggagaatctttgagagccagcatagcaaagcaagtaggtcaag 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  176725 taatgaacatagaaccaacataaaataaattaaataataaacggaaacaccacaggaggagaatctttgagagccagcagagcaaagcaagtaggtcaag 176626  T
Q  102 gtgatatgagactctcaacatagacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  176625 gtgatatgagactctcaacatagacatcacagttgaaggaactctcaagatagatatttgagttgaaggaaatacatgggaggccttgaatcttgggatt 176526  T
Q  202 ctttactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcagaaatataaagccgagtaatgcag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  176525 ctttactgcaccagtcttgtaattgtaaacatataccttattgatgaagtacacgaacacttggtggtcctcctcagaaatataaagccgagtaatgcag 176426  T
Q  302 acgccatcaagaccaacgaattcggcgaatggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatat 392  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  176425 acgccatcaagaccaacgaattcggcaaatggaagagtgaacaatttagtccaagaatctttatttccataatcattcatacgccaaatat 176335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 7564504 - 7564573
Alignment:
Q  59 ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 128  Q
    ||||||||| ||||| ||| |||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  7564504 ggagaatctctgagatccaacatagcaaagcgtgtaggtcaaggtgatacgagactctcaacatagacat 7564573  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 1453677 - 1453787
Alignment:
Q  179 gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcag 278  Q
    ||||||||||||||||| ||| ||||||  | || | |||||||||||||||||||||||| ||  || ||||| | ||||||||||   |||||||| |    
T  1453677 gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcgg 1453776  T
Q  279 aaatataaagc 289  Q
    |||||||||||    
T  1453777 aaatataaagc 1453787  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 1465369 - 1465479
Alignment:
Q  179 gggaggccttgaatcttgggattctttactgcaccagtcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcag 278  Q
    ||||||||||||||||| ||| ||||||  | || | |||||||||||||||||||||||| ||  || ||||| | ||||||||||   |||||||| |    
T  1465369 gggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcgg 1465468  T
Q  279 aaatataaagc 289  Q
    |||||||||||    
T  1465469 aaatataaagc 1465479  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 1442096 - 1442148
Alignment:
Q  330 atggaagagtgaacgatttagtccaagaatctttatttccataatcgttcata 382  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||| ||||||    
T  1442096 atggaacagtgaacaatttagtccaagaatctttaattccataatccttcata 1442148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 1459275 - 1459340
Alignment:
Q  57 gaggagaatctttgagagccagcatagcaaagcaa-----gtaggtcaaggtgatatgagactctc 117  Q
    |||||||||||| |||||||| ||||||| |||||     ||||||||||||||||||||||||||    
T  1459275 gaggagaatcttcgagagccaacatagcacagcaaataatgtaggtcaaggtgatatgagactctc 1459340  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 1459403 - 1459476
Alignment:
Q  216 tcttgtaattgtaaacatataccttattgttgaagtccacgaacacttggtggtcctcctcagaaatataaagc 289  Q
    ||||||||||||||||||||| |||||| | ||| || | || ||||||||  || ||||||||||||||||||    
T  1459403 tcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagc 1459476  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 392
Target Start/End: Original strand, 7564737 - 7564801
Alignment:
Q  328 gaatggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatat 392  Q
    |||||||| | ||||| |||||||||||||||| || ||||||||||| ||||||  ||||||||    
T  7564737 gaatggaacactgaacaatttagtccaagaatccttgtttccataatccttcataacccaaatat 7564801  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 128
Target Start/End: Original strand, 370569 - 370604
Alignment:
Q  93 taggtcaaggtgatatgagactctcaacatagacat 128  Q
    |||||||||||||||||||||||||||| |||||||    
T  370569 taggtcaaggtgatatgagactctcaacgtagacat 370604  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 374
Target Start/End: Original strand, 370782 - 370817
Alignment:
Q  339 tgaacgatttagtccaagaatctttatttccataat 374  Q
    ||||| ||||||||||||||||||||||||||||||    
T  370782 tgaacaatttagtccaagaatctttatttccataat 370817  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 392
Target Start/End: Original strand, 1470926 - 1470973
Alignment:
Q  345 atttagtccaagaatctttatttccataatcgttcatacgccaaatat 392  Q
    |||||| |||||||||||||||||||||||| ||||||  ||||||||    
T  1470926 atttagaccaagaatctttatttccataatctttcataacccaaatat 1470973  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 1453587 - 1453656
Alignment:
Q  59 ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 128  Q
    ||||||| || ||||| || ||||| |||||||  |||| |||||||| ||||||||||||| |||||||    
T  1453587 ggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacat 1453656  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 1465279 - 1465348
Alignment:
Q  59 ggagaatctttgagagccagcatagcaaagcaagtaggtcaaggtgatatgagactctcaacatagacat 128  Q
    ||||||| || ||||| || ||||| |||||||  |||| |||||||| ||||||||||||| |||||||    
T  1465279 ggagaatattcgagagtcaacataggaaagcaataaggttaaggtgatgtgagactctcaacgtagacat 1465348  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 334 - 382
Target Start/End: Complemental strand, 2442098 - 2442050
Alignment:
Q  334 aagagtgaacgatttagtccaagaatctttatttccataatcgttcata 382  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||||    
T  2442098 aagagtgaacaatttagtccaagaatctttatttccatactccttcata 2442050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 4142124 - 4142181
Alignment:
Q  332 ggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 389  Q
    |||| ||||||| ||||||||||||| |||||||||||||| || |||||| ||||||    
T  4142124 ggaatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4142181  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 4157939 - 4157991
Alignment:
Q  337 agtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 389  Q
    ||||||| ||||||||||||| |||||||||||||| || |||||| ||||||    
T  4157939 agtgaacaatttagtccaagactctttatttccatattccttcataagccaaa 4157991  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 392
Target Start/End: Complemental strand, 55419843 - 55419783
Alignment:
Q  332 ggaagagtgaacgatttagtccaagaatctttatttccataatcgttcatacgccaaatat 392  Q
    |||| ||| ||| ||||||||||||||||||||||||||||| | |||||| |||| ||||    
T  55419843 ggaatagtaaacaatttagtccaagaatctttatttccataaaccttcataagccagatat 55419783  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 55420109 - 55420068
Alignment:
Q  57 gaggagaatctttgagagccagcatagcaaagcaagtaggtc 98  Q
    |||||||||||| ||||| ||||||||||||||| |||||||    
T  55420109 gaggagaatcttcgagagacagcatagcaaagcatgtaggtc 55420068  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 3927112 - 3927061
Alignment:
Q  340 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaata 391  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||  |||||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaata 3927061  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 382
Target Start/End: Complemental strand, 6538888 - 6538845
Alignment:
Q  339 tgaacgatttagtccaagaatctttatttccataatcgttcata 382  Q
    ||||| |||||||||||||||||||||||||||| || ||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcata 6538845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 7160752 - 7160801
Alignment:
Q  340 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 389  Q
    |||| |||||||||||||||| ||||||||||| || |||||| ||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaa 7160801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 7168688 - 7168737
Alignment:
Q  340 gaacgatttagtccaagaatctttatttccataatcgttcatacgccaaa 389  Q
    |||| |||||||||||||||| ||||||||||| || |||||| ||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaa 7168737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 23766857 - 23766902
Alignment:
Q  337 agtgaacgatttagtccaagaatctttatttccataatcgttcata 382  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||||    
T  23766857 agtgaacaatttagtccaagactctttatttccatattctttcata 23766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 23816705 - 23816750
Alignment:
Q  337 agtgaacgatttagtccaagaatctttatttccataatcgttcata 382  Q
    ||||||| ||||||||||||| |||||||||||||| || ||||||    
T  23816705 agtgaacaatttagtccaagactctttatttccatattctttcata 23816750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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