View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11232_low_3 (Length: 400)
Name: NF11232_low_3
Description: NF11232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11232_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 364
Target Start/End: Original strand, 27754109 - 27754450
Alignment:
| Q |
21 |
tacaagatattttaatttgtgtatatatatagccgtgacatatattgttccttttaccttacctatgaaatcaacctaaggttgatgatgttaccaatta |
120 |
Q |
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| T |
27754109 |
tacaagatattttaatttgtgtatatatatagccgtgacatatactgtcccttttaccttacctatgaaatcaacctaaggttgatgatgttaccaatta |
27754208 |
T |
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| Q |
121 |
attataaaaataagtgtccatttccaaacatgattacatgcatgcaacaaaatagctttgacctaattcaaaattaacataacacagaatgaccaatttc |
220 |
Q |
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| T |
27754209 |
attataaaaa--agtgtccatttccaaacatgattacatgcatgcaacaaaatagctttgacctaattcaaaattaacataacacagaatgaccaatttc |
27754306 |
T |
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| Q |
221 |
atatagaaaaagcgaactccaatggcaaattgaaacaatgaccaaacaagaggaacaaataattataacaagaaacgtatcaaaatgcacatgtgaattg |
320 |
Q |
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| T |
27754307 |
atatagaaaaagcgaactccaatggcaaattgaaacaatgaccaaacaagaggaacaaataattataacaagaaacgtatcaaaatgcacatgtgaattg |
27754406 |
T |
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| Q |
321 |
aagctaagctagcttcagttgatcaattccttttatttttgtac |
364 |
Q |
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| T |
27754407 |
aagctaagctagcttcagttgatcaattccttttatttttgtac |
27754450 |
T |
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