View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11232_low_4 (Length: 342)

Name: NF11232_low_4
Description: NF11232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11232_low_4
NF11232_low_4
[»] chr8 (2 HSPs)
chr8 (174-337)||(12528935-12529098)
chr8 (9-69)||(12529837-12529897)
[»] chr7 (23 HSPs)
chr7 (174-333)||(8546067-8546226)
chr7 (171-333)||(8576761-8576923)
chr7 (174-333)||(8582135-8582294)
chr7 (1-93)||(8591343-8591435)
chr7 (174-333)||(8559768-8559927)
chr7 (139-252)||(8602490-8602603)
chr7 (174-333)||(8570746-8570905)
chr7 (1-69)||(7876899-7876967)
chr7 (1-69)||(8647670-8647738)
chr7 (2-69)||(8582632-8582699)
chr7 (4-75)||(8602697-8602768)
chr7 (2-79)||(8568797-8568874)
chr7 (9-69)||(8538773-8538833)
chr7 (3-74)||(8546639-8546710)
chr7 (6-69)||(29581235-29581298)
chr7 (174-276)||(8538528-8538630)
chr7 (5-71)||(29577058-29577124)
chr7 (1-61)||(8382295-8382355)
chr7 (1-69)||(8610633-8610701)
chr7 (134-228)||(8382409-8382504)
chr7 (3-69)||(8635566-8635632)
chr7 (174-210)||(8567245-8567281)
chr7 (174-210)||(29581415-29581451)
[»] chr2 (1 HSPs)
chr2 (174-282)||(16661566-16661674)
[»] chr4 (2 HSPs)
chr4 (3-69)||(9323131-9323197)
chr4 (3-69)||(9377610-9377676)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 12529098 - 12528935
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||    
T  12529098 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaaggatcaactgttgtggccatttaaggtcactgctggtgctaatgacaa 12528999  T
Q  274 accgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatatcctct 337  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12528998 accgaagatccttgtgaactacaatgggaaggaacatcactttgttgctgaagaaatatcctct 12528935  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 12529897 - 12529837
Alignment:
Q  9 ttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    ||||||||| || |||| |||||||| ||| | |||||||| || ||||||||||||||||    
T  12529897 ttgattggtcatgctgccaaaaatcaagcttcctctaaccccaccaacactatctttggta 12529837  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 8546226 - 8546067
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa 273  Q
    ||||||||||||||||||||||||| || |||||||| ||| | ||||||||||| | ||||||||||||||||||||||| | | |||| |||||||||    
T  8546226 cagatgcaaagaggttaattggaaggaaatatagtgattcctttgttcagaatgatctactgttgtggccctttaaggtcatttccggtgttaatgacaa 8546127  T
Q  274 accgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatatc 333  Q
    |||||| || |||||||||||||| ||| ||||| | |||||||||||||||||||||||    
T  8546126 accgacaattcttgtgaactacaagggtgaggaaaagcactttgttgctgaagaaatatc 8546067  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 171 - 333
Target Start/End: Complemental strand, 8576923 - 8576761
Alignment:
Q  171 ttacagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatga 270  Q
    |||||||| ||||||||||||||||||| || |||||||| ||||| |||||||| ||    || ||||||||||||||||||| ||| ||| |||||||    
T  8576923 ttacagatacaaagaggttaattggaaggaaatatagtgattccattgttcagaaggattgtcttttgtggccctttaaggtcattgccggtactaatga 8576824  T
Q  271 caaaccgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatatc 333  Q
    ||||||||| ||| ||||||||||||| ||| ||||| | | |||||||||||||||||||||    
T  8576823 caaaccgacaatcgttgtgaactacaaaggtgaggaaaaacgctttgttgctgaagaaatatc 8576761  T

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Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 8582294 - 8582135
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa 273  Q
    ||||||||||||||||||||||||| || |||||||| ||||| ||||| || ||      |||||||||||| |||||||| || ||||||||||||||    
T  8582294 cagatgcaaagaggttaattggaaggaaatatagtgattccattgttcaaaaggatatcaagttgtggcccttcaaggtcaccgcaggtgctaatgacaa 8582195  T
Q  274 accgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatatc 333  Q
    |||||| ||| ||||||||||||| ||||||||| | |||||| ||||||||||||||||    
T  8582194 accgacaatcgttgtgaactacaagggtaaggaaaaacactttcttgctgaagaaatatc 8582135  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8591435 - 8591343
Alignment:
Q  1 atcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggtagtttatttttctatcttcctgcat 93  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| |||| |||| ||||| ||| |||||||||||||    
T  8591435 atcaaaggttgattggtgatgctgcaaaaaaccaggctgcttctaacccagcaaacactgtcttcggtaatttatctttttatcttcctgcat 8591343  T

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Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 8559927 - 8559768
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa 273  Q
    ||||||||||||||||||||||||| || || ||||| |||||||| || | |||   |||||||||||||||||||||||  ||||| | |||||||||    
T  8559927 cagatgcaaagaggttaattggaaggaaatacagtgattccatagtccaaagtgatgtactgttgtggccctttaaggtcatcgctggcgataatgacaa 8559828  T
Q  274 accgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatatc 333  Q
    ||| ||| |||||||||| ||||  || |||||| | ||  ||||||| |||||||||||    
T  8559827 accaacggtccttgtgaaatacaggggcaaggaaaagcatcttgttgccgaagaaatatc 8559768  T

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Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 252
Target Start/End: Complemental strand, 8602603 - 8602490
Alignment:
Q  139 aaaaaatttatatatcacaaacacttatattgttacagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttg 238  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||  |  ||||||||||   || ||||    
T  8602603 aaaaaatttatatatcaccaacacttctattgttacagatgcaaagaggttaattggaaggaaatatagtgattctgtcattcagaatgacatacggttg 8602504  T
Q  239 tggccctttaaggt 252  Q
    ||||| ||||||||    
T  8602503 tggccatttaaggt 8602490  T

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Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 333
Target Start/End: Complemental strand, 8570905 - 8570746
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa 273  Q
    |||||| |||||||||||||||||| ||||||||||| ||||| |||||||  || | ||| |||||||||||||||||||   | ||||||||  ||||    
T  8570905 cagatgtaaagaggttaattggaaggaagtatagtgattccatcgttcagatggatcgacttttgtggccctttaaggtcatctccggtgctaacaacaa 8570806  T
Q  274 accgacgatccttgtgaactacaatggtaaggaacatcactttgttgctgaagaaatatc 333  Q
    ||| || ||| ||||||| ||||  ||||||||| | |  ||||| ||||||||||||||    
T  8570805 accaacaatcattgtgaagtacatgggtaaggaaaaacgttttgtagctgaagaaatatc 8570746  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7876899 - 7876967
Alignment:
Q  1 atcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||||| | |||||| |||||||||    
T  7876899 atcaaaggttgattggtgatgctgccaaaaatcaggctgcctctaacccatccaacactgtctttggta 7876967  T

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Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8647738 - 8647670
Alignment:
Q  1 atcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||| || |||||| |||||||||    
T  8647738 atcaaaggttgattggtgatgccgctaaaaatcaggctgcttctaaccctaccaacactgtctttggta 8647670  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 8582699 - 8582632
Alignment:
Q  2 tcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    |||||| |||||||||||| |||| |||||||| ||||||||||||||||| |||||||||| |||||    
T  8582699 tcaaagattgattggtgatgctgccaaaaatcaagctgcttctaacccaaccaacactatctatggta 8582632  T

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Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 8602768 - 8602697
Alignment:
Q  4 aaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggtagtttat 75  Q
    |||||||||| |||||| |||| ||||||||||||||||||||||||   |||||||||||||||| |||||    
T  8602768 aaaggttgatcggtgatgctgccaaaaatcaggctgcttctaacccagtcaacactatctttggtaatttat 8602697  T

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Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 8568874 - 8568797
Alignment:
Q  2 tcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggtagtttattttt 79  Q
    |||||| |||||||||||| |||| |||||||| ||||||||||| ||||| ||||||| |||||||| || ||||||    
T  8568874 tcaaagattgattggtgatgctgccaaaaatcaagctgcttctaatccaaccaacactacctttggtaattcattttt 8568797  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 8538833 - 8538773
Alignment:
Q  9 ttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    |||||||||||| |||| |||||||| ||| | |||||||||||||||||| |||||||||    
T  8538833 ttgattggtgatgctgccaaaaatcaagcttcctctaacccaacaaacactgtctttggta 8538773  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 8546710 - 8546639
Alignment:
Q  3 caaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggtagttta 74  Q
    |||||| ||||||||||| |||| |||||||||||| ||||||||||||  |||||| | ||||||| ||||    
T  8546710 caaaggctgattggtgatgctgccaaaaatcaggcttcttctaacccaatcaacactgtatttggtaattta 8546639  T

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Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 69
Target Start/End: Original strand, 29581235 - 29581298
Alignment:
Q  6 aggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    ||||||||| || || |||| ||||||||||||||  | |||||||||||||||||||||||||    
T  29581235 aggttgattagtaatgctgctaaaaatcaggctgccgcaaacccaacaaacactatctttggta 29581298  T

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Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 8538630 - 8538528
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa 273  Q
    ||||||| ||||||||  |||||||||| |||||||| ||  |  ||||||||||   ||||||||||||||| ||||| | ||||| ||||||||| ||    
T  8538630 cagatgctaagaggttggttggaagaaaatatagtgattctgttattcagaatgatttactgttgtggcccttcaaggtaaatgctgatgctaatgataa 8538531  T
Q  274 acc 276  Q
    |||    
T  8538530 acc 8538528  T

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Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 29577058 - 29577124
Alignment:
Q  5 aaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggtagt 71  Q
    |||||| |||||| || |||| |||||||||||||| || |||||||| ||||||||||| ||||||    
T  29577058 aaggttaattggtaatgctgctaaaaatcaggctgcctcaaacccaaccaacactatcttcggtagt 29577124  T

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Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8382295 - 8382355
Alignment:
Q  1 atcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactat 61  Q
    ||||||||||| |||||||| |||| || |||||| |||| ||||||||||| ||||||||    
T  8382295 atcaaaggttggttggtgatgctgctaagaatcagactgcctctaacccaaccaacactat 8382355  T

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Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 8610701 - 8610633
Alignment:
Q  1 atcaaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    ||||||||||||| |||||| |||| |||||||| |||||||| |||||| | |||||  |||||||||    
T  8610701 atcaaaggttgataggtgatgctgctaaaaatcaagctgcttcaaacccagctaacacagtctttggta 8610633  T

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Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 8382409 - 8382504
Alignment:
Q  134 agaacaaaa-aatttatatatcacaaacacttatattgttacagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatga 228  Q
    ||||||||| ||||||| |||||  || |||| ||||| ||||||||||||||| || |||||||| || |||||||| || ||  ||||||||||    
T  8382409 agaacaaaacaatttatttatcagtaaaacttttattgctacagatgcaaagagattgattggaaggaaatatagtgattctattattcagaatga 8382504  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 8635566 - 8635632
Alignment:
Q  3 caaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    |||||||||||||||||| |||| ||||| |||||| | ||||||||| | || ||| |||||||||    
T  8635566 caaaggttgattggtgatgctgccaaaaaccaggcttcctctaacccatccaatactgtctttggta 8635632  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 8567281 - 8567245
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtga 210  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  8567281 cagatgcaaagaggttaactggaagaaaatatagtga 8567245  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 29581415 - 29581451
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtga 210  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  29581415 cagatgcaaagaggttaatcggaagaaaatatagtga 29581451  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 282
Target Start/End: Original strand, 16661566 - 16661674
Alignment:
Q  174 cagatgcaaagaggttaattggaagaaagtatagtgactccatagttcagaatgagcaactgttgtggccctttaaggtcactgctggtgctaatgacaa 273  Q
    ||||||| |||||||||||||| || || | ||||||| || | ||||| || ||   |||||||||||| || ||||| | |||||||| |||||||||    
T  16661566 cagatgctaagaggttaattggtaggaaatttagtgaccccgttgttcaaaaagatatactgttgtggccgttcaaggttattgctggtgttaatgacaa 16661665  T
Q  274 accgacgat 282  Q
    ||| |||||    
T  16661666 acctacgat 16661674  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 9323131 - 9323197
Alignment:
Q  3 caaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    |||||||||||||||||| |||| || |||||  ||||| |||||||   |||||||||||||||||    
T  9323131 caaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggta 9323197  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 9377610 - 9377676
Alignment:
Q  3 caaaggttgattggtgattctgcaaaaaatcaggctgcttctaacccaacaaacactatctttggta 69  Q
    |||||||||||||||||| |||| || |||||  ||||| |||||||   |||||||||||||||||    
T  9377610 caaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggta 9377676  T

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