View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11232_low_5 (Length: 252)
Name: NF11232_low_5
Description: NF11232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11232_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 22831910 - 22831686
Alignment:
| Q |
11 |
gaacctgtggaagtggaagataagatccatacacactgcatgcaaaagaactattaggaagatatgatgnnnnnnnntaaaagaatcttatagaaaaatt |
110 |
Q |
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| T |
22831910 |
gaacatgtggaagtggaagataagatccatacacactgcatgcaaaagaactattaggaagatatgatgaaaaaaaataaaagaatcttatagaaaaagt |
22831811 |
T |
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| Q |
111 |
gtacttcacctcattatcgtatattagagaaatttagtgcactaacaagaaatgagacaaaggtttggcagcgtgaagaaacaagacagatagaacgaca |
210 |
Q |
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| T |
22831810 |
gtacttcacctcattatcgtatattagagaaatttagtgcactaacaagaaatgagacaaaggtttggcagcgtgaagaaacaagacagatagaacgaca |
22831711 |
T |
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| Q |
211 |
attcttgtacaatggaggcagtaac |
235 |
Q |
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||||||||||||||||||||||||| |
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| T |
22831710 |
attcttgtacaatggaggcagtaac |
22831686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 163
Target Start/End: Complemental strand, 22984000 - 22983923
Alignment:
| Q |
88 |
taaaagaatcttatagaaaaattgtacttca--cctcattatcgtatattagagaaatttagtgcactaacaagaaat |
163 |
Q |
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|||||||| ||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
22984000 |
taaaagaaccttcaagaaaaagagtacttcaaacctcgttatcgtatattagagaaatttagtgcactaacacgaaat |
22983923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 22823104 - 22823063
Alignment:
| Q |
11 |
gaacctgtggaagtggaagataagatccatacacactgcatg |
52 |
Q |
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| T |
22823104 |
gaacatgtggaagtggaagataagatccatacacactgcatg |
22823063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 11544256 - 11544290
Alignment:
| Q |
11 |
gaacctgtggaagtggaagataagatccatacaca |
45 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
11544256 |
gaacatgtggaagtggaagataagatccatacaca |
11544290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 11557677 - 11557711
Alignment:
| Q |
11 |
gaacctgtggaagtggaagataagatccatacaca |
45 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
11557677 |
gaacatgtggaagtggaagataagatccatacaca |
11557711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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