View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_high_1 (Length: 924)
Name: NF11233_high_1
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 276 - 906
Target Start/End: Complemental strand, 21556637 - 21556005
Alignment:
| Q |
276 |
agttaaaaataagtttcaaataaaatgaattatgtgcatatgctttgtcacatcaatctaggttaaaagtaaatgatacnnnnnnnc-ctatgatatacg |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
21556637 |
agttaaaaataagtttcaaataaaatgaattatgtgcatatgctttgtcacatcaatctgggttaaaagtaaatgatataaaaaaaaactatgatatacg |
21556538 |
T |
|
| Q |
375 |
atcacagggtcgatcaattgtgtttatgtctctgattaatgagtaactacaataaatatacgttttgctaacgagttccctaaaaacattgtttaaaaat |
474 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
21556537 |
atcatagggtcgatcaattgtgtttatgtctctgattaatgagcaactacaataactatacgttttactaacgagttccctaaaaatattgtttaaaaat |
21556438 |
T |
|
| Q |
475 |
tctattaannnnnnnnnngtcttgtaaattcaacttgtttcttttgttaatgcaataattacacaaaattttatataaacttactatttttagtattcta |
574 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21556437 |
tctattaattttttttt-gtcttgtaaattcaacttgtttcttttgttaatgcaataattacacaaaattttatataaacttactatttttagtattcta |
21556339 |
T |
|
| Q |
575 |
actaatgccctaaggacacaccttacctaatctgctcgagcaacctagccacttatcaataaactatgtaccataagaga--tgagatgtattcatgtta |
672 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
21556338 |
actaatgccctaagggcacaccttacctaatctgctcgagcaacctagccacttatcaataaactatgtaccataagagagatgagatgtattcatgtta |
21556239 |
T |
|
| Q |
673 |
aattgaattgagataagtttaaagataaaagttacgtacttggaagacaaagtacaaattataacatcaagtttgactcaattttaatcgataaccccat |
772 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21556238 |
aattgaattgagataagtttaaaggtaaaagttacgtacttggaagacaaagtacaaattataacatcaagtttgactcaattttaatcgataaccccat |
21556139 |
T |
|
| Q |
773 |
gcatatgaaaatcaatttcaaaattattttgtttcttgcaaaagtaaatccaaaaactgtacatgtttgtcattggcagaccgaaaagaacttgggacaa |
872 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21556138 |
gcatatgaaaatcaatttcaaaattattttgtttcttgcaaaagtaaatccaaaaactgtacatgtttgtcattggcagaccgaaaagaacttgggacaa |
21556039 |
T |
|
| Q |
873 |
aatcataaagaaccattgttttaggagtcacatt |
906 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |
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| T |
21556038 |
aatcataaagaaccattgttttaggtgtcacatt |
21556005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 21556903 - 21556690
Alignment:
| Q |
10 |
agcagagatgaaaagtaaggggtccatgttcttggtttgtttaggcagaacttcagtggaccctactgaccaaggtggggctggtctcctctttgggacc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21556903 |
agcagagatgaaaagtaaggggtccatgttcttggtttgtttaggcagaacttcagtggaccctactgaccaaggtggggctggtctcctctttgggacc |
21556804 |
T |
|
| Q |
110 |
cactttcaggatgcttgggatgatcttgtccaagaggtaataatttttcttaatcacatacatttttatgagtgcttcctagtcttgtcaaatagtgcac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21556803 |
cactttcaggatgcttgggatgatcttgtccaagaggtaataatttttcttaatcacatacatttttatgagtgcttcctagtcttgtcaaatagtgcac |
21556704 |
T |
|
| Q |
210 |
accacaattgagtg |
223 |
Q |
| |
|
||||||||||||| |
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|
| T |
21556703 |
cccacaattgagtg |
21556690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 20852929 - 20852808
Alignment:
| Q |
27 |
aggggtccatgttcttggtttgtttaggcagaacttcagtggaccctactgaccaaggtggggctggtctcctctttgggacccactttcaggatgcttg |
126 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||| | || |||||||||||||||||||||||||| |
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|
| T |
20852929 |
aggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgcttg |
20852830 |
T |
|
| Q |
127 |
ggatgatcttgtccaagaggta |
148 |
Q |
| |
|
|||||| ||||| ||||||||| |
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|
| T |
20852829 |
ggatgaccttgtacaagaggta |
20852808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 41000590 - 41000469
Alignment:
| Q |
27 |
aggggtccatgttcttggtttgtttaggcagaacttcagtggaccctactgaccaaggtggggctggtctcctctttgggacccactttcaggatgcttg |
126 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| || || |||||||| ||||| | || |||||||||||||||||||||||||| |
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| T |
41000590 |
aggggtccatgttcttagtttgcttaggcagaacttcagtggaccccacagaacaaggtggtgctggagttctttttgggacccactttcaggatgcttg |
41000491 |
T |
|
| Q |
127 |
ggatgatcttgtccaagaggta |
148 |
Q |
| |
|
|||||| ||||| ||||||||| |
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|
| T |
41000490 |
ggatgaccttgtacaagaggta |
41000469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 512 - 583
Target Start/End: Complemental strand, 8034782 - 8034711
Alignment:
| Q |
512 |
tttcttttgttaatgcaataattacacaaaattttatataaacttactatttttagtattctaactaatgcc |
583 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||||||||||| || |||||||| ||| | ||||||| |
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| T |
8034782 |
tttcttttgtcaatgcaataattatacaaatttttatataaacttgttacttttagtactctgattaatgcc |
8034711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 587
Target Start/End: Original strand, 13268160 - 13268224
Alignment:
| Q |
523 |
aatgcaataattacacaaaattttatataaacttactatttttagtattctaactaatgccctaa |
587 |
Q |
| |
|
|||| |||||||||||||| || ||||||| ||||||| |||||||| | ||||||||||||||| |
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|
| T |
13268160 |
aatgtaataattacacaaatttatatataatcttactacttttagtactataactaatgccctaa |
13268224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 581
Target Start/End: Complemental strand, 21018324 - 21018266
Alignment:
| Q |
523 |
aatgcaataattacacaaaattttatataaacttactatttttagtattctaactaatg |
581 |
Q |
| |
|
|||| |||||||||| ||| || |||||||||||||||||||||||| |||||| |||| |
|
|
| T |
21018324 |
aatgtaataattacataaatttctatataaacttactatttttagtactctaaccaatg |
21018266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 569
Target Start/End: Complemental strand, 5537664 - 5537595
Alignment:
| Q |
500 |
aaattcaacttgtttcttttgttaatgcaataattacacaaaattttatataaacttactatttttagta |
569 |
Q |
| |
|
|||| ||||||||| |||| | ||||||||||||||||||| |||||||||| |||||| |||||||| |
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|
| T |
5537664 |
aaatgcaacttgttcattttatcaatgcaataattacacaaatttttatataagtttactacttttagta |
5537595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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