View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_high_10 (Length: 415)
Name: NF11233_high_10
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 262 - 402
Target Start/End: Complemental strand, 40146404 - 40146264
Alignment:
| Q |
262 |
aaacaaaactgcacgtgcctgaagtcatcttcctggtgaggccttgctcccggattctgagtttgagtactttggatccgtaagagagtgacaggaaggt |
361 |
Q |
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| T |
40146404 |
aaacaaaagtgcacgtgcctgaagtcatcttcctggtgaggccttgctcccggattctgagtttgagtactttggatccgtaagagagtgacagggaggt |
40146305 |
T |
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| Q |
362 |
tctgaacctcctccttgcacacatcacatgtcttgttacct |
402 |
Q |
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| T |
40146304 |
tctgaacctcctccttgcatacgtcacaggtcttgttacct |
40146264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40146798 - 40146580
Alignment:
| Q |
1 |
caagaataatttcaactagataatgcaaggaaaaaacctacaacttcaacacaaccaagtcagagatcacagaaaatcgcagtttatcaaattctgctac |
100 |
Q |
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| T |
40146798 |
caagaataatttcaactagatatcgcacggaataaacctacaacttcaatgcaagcaagtcaga----------aatcgcagttgaccaaattctgctac |
40146709 |
T |
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| Q |
101 |
gtaacagtgctatagtatcgctatgtgacaacattatgtactaaatagcgtattggtgttggcctattggaaaacagtagtgatttgttcaaattacgcg |
200 |
Q |
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| T |
40146708 |
gtaacagtgctacagtaccgctatgtgacaacattttgtactaattagaata------ttggcctattgg--aagaatagtgatttgttcaaatta--cg |
40146619 |
T |
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| Q |
201 |
ctataactgttatctaacaacactgctggatgtgcaaaa |
239 |
Q |
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| T |
40146618 |
ctataactgctatctaactacactgccggatgtgcaaaa |
40146580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 16866700 - 16866663
Alignment:
| Q |
87 |
tcaaattctgctacgtaacagtgctatagtatcgctat |
124 |
Q |
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| T |
16866700 |
tcaaattctgctacgcaacagtgctatagcatcgctat |
16866663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 21931024 - 21931092
Alignment:
| Q |
330 |
actttggatccgtaagagagtgacaggaaggttctgaacctcctccttgcacacatcacatgtcttgtt |
398 |
Q |
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| T |
21931024 |
actttggatccgtagtagagtgacaggaaggtttgtaacctcctttctgcagacatcacatgtcttgtt |
21931092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 8520861 - 8520799
Alignment:
| Q |
86 |
atcaaattctgctacgtaacagtgctatagtatcgctatgtgacaacattatgtactaaatag |
148 |
Q |
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| T |
8520861 |
atcaaattccgctacgtaacaatgctatagcaccactatttgacaacattttgtaccaaatag |
8520799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 38346956 - 38346890
Alignment:
| Q |
87 |
tcaaattctgctacgtaacagtgctatagtatcgctatgtgacaacattatgtactaaatagcgtat |
153 |
Q |
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| T |
38346956 |
tcaaattttgctacccaacagtgctatagcaccgctatttgacaacattttgtagtaaatagtgtat |
38346890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 33534648 - 33534685
Alignment:
| Q |
87 |
tcaaattctgctacgtaacagtgctatagtatcgctat |
124 |
Q |
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| T |
33534648 |
tcaaattctgctacgcaacagtgctatagcatcgctat |
33534685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 402
Target Start/End: Complemental strand, 28483831 - 28483775
Alignment:
| Q |
346 |
agagtgacaggaaggttctgaacctcctccttgcacacatcacatgtcttgttacct |
402 |
Q |
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| T |
28483831 |
agagtgacaggtaagttctgaacttcttgcttgcacacatcacatgtcctattacct |
28483775 |
T |
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