View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_high_11 (Length: 390)
Name: NF11233_high_11
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 32949289 - 32949641
Alignment:
| Q |
17 |
acatcaatgttgtatatcatacacaacatcaaaacacttcaataatgtttaaaaaagcaatatgaacccaaaatatgttacataaaaaactgagttatgg |
116 |
Q |
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| T |
32949289 |
acatcaatgttgtatatcatacacaacatcaaaacacttcaataatgtttaaaaaagcaatatgaacccaaaatatgttacataaaaaactgagttatgg |
32949388 |
T |
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| Q |
117 |
aatgtcataaaaaattactcataaagggtaacgcaattttaaataaggaatacacatctaactcatatcaaccttcaaaacatgttagaaagaaatacaa |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32949389 |
aatgtcataaaaaattactcataaagggtaacacaattttaaattaggaatacacatctaactcatatcaaccttcaaaacatgttagaaagaaatacaa |
32949488 |
T |
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| Q |
217 |
actaatgtgtctacgaatttgtaatcatatatgaaatggatgttgcgtgacgaatatctaaattcattttaaagttaattannnnnnnnnagatttgaac |
316 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32949489 |
actaatgtgtctatgaatttgtaatcatatatgaaatggatgttgcgtgacgaatatctaaattcattttaaagttaattatttttttttagatttgaac |
32949588 |
T |
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| Q |
317 |
aaattaaatttaaacatatgttcatttgacacatcaagattgttttgagggtt |
369 |
Q |
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| T |
32949589 |
aaattaaatttaaacatatgttcatttgacacatcaagattgttttgagggtt |
32949641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 43538976 - 43539054
Alignment:
| Q |
41 |
aacatcaaaacacttcaataatgtttaaaaaagcaatatgaacccaaaatatgttacat-aaaaaactgagttatggaa |
118 |
Q |
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|||| |||||||| |||||||||||||| |||||||| |||| ||| |||||| || || |||||| ||| |||||||| |
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| T |
43538976 |
aacaccaaaacacgtcaataatgtttaagaaagcaatgtgaatccataatatgctatatcaaaaaaatgaattatggaa |
43539054 |
T |
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