View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_high_25 (Length: 232)
Name: NF11233_high_25
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41785761 - 41785530
Alignment:
| Q |
1 |
attgctcatgacacactctctgtgttcctcgacttttgcagccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785761 |
attgctcatgacacactctctgtgttcctcgactttcgcagccactacatctaatccatttagagcagcatcaaattcaaaaccctttagatcaaccact |
41785662 |
T |
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| Q |
101 |
ggtgagtgtgtttcctcacttgcagttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785661 |
ggtgagtgtgtttcctcacttgcatttgcagtaacattagcagcaccctctttaagccttcttagttcctcttcataaatagaaactttctccccaagaa |
41785562 |
T |
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| Q |
201 |
tcttgttctcttcctcgtaccttatctttgtt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
41785561 |
tcttgttctcttcctcgtaccttatctttgtt |
41785530 |
T |
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