View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_high_26 (Length: 230)
Name: NF11233_high_26
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_26 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 42302499 - 42302665
Alignment:
| Q |
64 |
tataatagtgatgatgatgaattgaactaactgttgggatgatttggtacggaaagtctgtacgccgagagaaagacacgcaatccgtttgtccttgaat |
163 |
Q |
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| T |
42302499 |
tataatagtgatgatgatgaattgaactaactgttgggatgatttggtacggaaagtctgtacgccgagagaaagacacgcaatccatttgtccttgaat |
42302598 |
T |
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| Q |
164 |
tgcatctccgtgcaggggagggcgaagagagcgatttaggtgcagttggcagcagagagtagtttgt |
230 |
Q |
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| T |
42302599 |
tgcatctccgtgtagaggagggcgaagagagcgattccggtgaagttggcagcagagagtagtttgt |
42302665 |
T |
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Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 2368719 - 2368885
Alignment:
| Q |
64 |
tataatagtgatgatgatgaattgaactaactgttgggatgatttggtacggaaagtctgtacgccgagagaaagacacgcaatccgtttgtccttgaat |
163 |
Q |
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| T |
2368719 |
tataatagtgatgatgataaattgaactaactgttgggatgatttggtacggaaagtctgtacgccgaaagaaagacacgcaatccatttgcccttgaat |
2368818 |
T |
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| Q |
164 |
tgcatctccgtgcaggggagggcgaagagagcgatttaggtgcagttggcagcagagagtagtttgt |
230 |
Q |
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| T |
2368819 |
tgcatctccgtgcaaatgagggcgaagagagcgattccgatgaagttggaagtagagagtagtttgt |
2368885 |
T |
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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 1343348 - 1343446
Alignment:
| Q |
101 |
gatgatttggtacggaaagtctgtacgccgagagaaagacacgcaatccgtttgtccttgaattgcatctccgtgcaggggagggcgaagagagcgatt |
199 |
Q |
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| T |
1343348 |
gatgatttggtacggaaagtctgttcgccgagagaaaggcaggcaatccatttgtccttgaattgcatctccgcgcggaggagggcgaagagagcgatt |
1343446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 14208188 - 14208274
Alignment:
| Q |
144 |
caatccgtttgtccttgaattgcatctccgtgcaggggagggcgaagagagcgatttaggtgcagttggcagcagagagtagtttgt |
230 |
Q |
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| T |
14208188 |
caatccatctgtccttgaattgcatctccgtgcagaggagggcgaagagagcgattccagtgaagttggcaacgaagagtagtttgt |
14208274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 14208143 - 14208181
Alignment:
| Q |
64 |
tataatagtgatgatgatgaattgaactaactgttggga |
102 |
Q |
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| T |
14208143 |
tataatagtgatgatgatgaattgaactaactcttggga |
14208181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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