View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_high_27 (Length: 223)
Name: NF11233_high_27
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 48754142 - 48753986
Alignment:
| Q |
50 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaacattgcccaaggtcgcggccagtgcaacagtc |
149 |
Q |
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| T |
48754142 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaatattgcccgaggtcgcggccagtgcaacagtc |
48754043 |
T |
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| Q |
150 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754042 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagg |
48753986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 49
Target Start/End: Complemental strand, 48754430 - 48754392
Alignment:
| Q |
11 |
agcagagagaacaataaaacaatagaataaaggaaacat |
49 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
48754430 |
agcatagagaacaataaaacaatagaataaaggaaacat |
48754392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 52091534 - 52091690
Alignment:
| Q |
50 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaacctggcgccgcgttcaacattgcccaaggtcgcggccagtgcaacagtc |
149 |
Q |
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| T |
52091534 |
aatgatcattcaatcttacgttattgtagggtctccattagtagacaacaacctggcgccgcgttcaatattgcccgaggtcgcggccagtgcaacagtc |
52091633 |
T |
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| Q |
150 |
aggacagttacatttagtaacttcctcaagttcatcgagttcagccatgacagaagg |
206 |
Q |
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| T |
52091634 |
aggacagttacatttagaaacttcctcaagttcatggaattcagccacgacagaagg |
52091690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 52091239 - 52091277
Alignment:
| Q |
11 |
agcagagagaacaataaaacaatagaataaaggaaacat |
49 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
52091239 |
agcatagagaacaataaaacaatagaataaaggaaacat |
52091277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 101
Target Start/End: Complemental strand, 38462435 - 38462384
Alignment:
| Q |
50 |
aatgatcattcaatcttacgttattgtagggtctccattgttagacaacaac |
101 |
Q |
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|||||||||||| | |||| ||||| |||||||||| ||||||||||||||| |
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| T |
38462435 |
aatgatcattcagtgttaccttattatagggtctccgttgttagacaacaac |
38462384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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