View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11233_high_5 (Length: 523)
Name: NF11233_high_5
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 42302664 - 42303066
Alignment:
| Q |
1 |
gttagtactacctttcagaacggagtatatcctacaaaaaatccagataaataaaacaaaatcaagagccatgttttatctcttctcaatcccttgcata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42302664 |
gttagtactacctttcagaacggagtatatcttacaaaaaatccagataaataaaacaaaatcaagagccttgttttatctcttctcaatcccttgcata |
42302763 |
T |
|
| Q |
101 |
atggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataacacaca |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| |
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|
| T |
42302764 |
atggtgttagagaattgaattaacaacttaaataaaaggattcattgaagaatttaacaggacttggagacaatttcaaagcctaaatataaaacacaca |
42302863 |
T |
|
| Q |
201 |
tttgtaacccaaaaagaacatgatttgtaaaagtaaatccatgaggcattcgatcaaacatgtaaaataagaaataattgaagatggaaaaattacccaa |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42302864 |
tttgtaacccaaaaagaacatgagttgtaaaagtaaatccatgaggcattcgatcaaacatgtaaaataagaaataattgaagatggaaaaattacccaa |
42302963 |
T |
|
| Q |
301 |
aagctgatgaatccaaacaacaacttgaacaggggaaataacatatctttgcatttctccaactcataaaaaaaggattggaaatagacattataacctt |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
42302964 |
aagctgatgaatccaaacaacatcttgaacaggggaaataacatatctttgcatttctccaactcat-aaaaaaggattgaaaatagacattataacctt |
42303062 |
T |
|
| Q |
401 |
aagc |
404 |
Q |
| |
|
|||| |
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|
| T |
42303063 |
aagc |
42303066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 4411558 - 4411507
Alignment:
| Q |
172 |
aatttcaaagcctaaatacataacacacatttgtaacccaaaaagaacatga |
223 |
Q |
| |
|
||||| |||| |||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
4411558 |
aattttaaagtctaaatctaaaacacacatttgtaacccaaaaagaacatga |
4411507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 27964649 - 27964740
Alignment:
| Q |
130 |
aaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataacacacatttgtaacccaaaaagaacatga |
223 |
Q |
| |
|
||||||||| ||||||| |||||| ||| | || | ||||||||||| ||||||||| | | |||| ||||||| |||||||||||||||||| |
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|
| T |
27964649 |
aaataaaagaattcattcaagaatgtaaaaggagt-ggagacaattttaaagcctaattctaaaaca-acatttgaaacccaaaaagaacatga |
27964740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 2368884 - 2369292
Alignment:
| Q |
1 |
gttagtactacctttcagaacggagtatatcctacaa------aaaatccagataaataaaacaaaatcaagagccatgttttatctcttctcaatccct |
94 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2368884 |
gttagtactacctttcggaacggagtatatcctacaacaacaaaaaaaccaactaaataaaacaaaatcaagagccctgttttatctcttctcaatccct |
2368983 |
T |
|
| Q |
95 |
tgcataatggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || |
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|
| T |
2368984 |
tgcataatggtgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaatcctaaatataaaa |
2369083 |
T |
|
| Q |
195 |
cacacatttgtaacccaaaaagaacatgatttgtaaaagtaaatccatgaggcattcgatcaaacatgtaaaataagaaataattgaagatggaaaaatt |
294 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2369084 |
cgcacatttgtaacccaaaaagaacatgagttgtaaaagtaaatccatgaggcattcaatgaaacatgtaaaataagaaataattaaagatggaaaaatt |
2369183 |
T |
|
| Q |
295 |
acccaaaagctgatgaatccaaacaacaacttgaacaggggaaataacatatctttgcatttctccaactcataaaaaaaggattggaaatagacattat |
394 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| ||||||| || |||||| ||||||||||||||||| |||| ||||| || | ||||||||||||| |
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|
| T |
2369184 |
acccaaaagttgatgaatccaaacaacatcttcaacagggaaattaacatgtctttgcatttctccaattcatgaaaaaggg-tcccaaatagacattat |
2369282 |
T |
|
| Q |
395 |
aaccttaagc |
404 |
Q |
| |
|
||| |||||| |
|
|
| T |
2369283 |
aacattaagc |
2369292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 9e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 14208277 - 14208533
Alignment:
| Q |
5 |
gtactacctttcagaacggagtatatcctacaaaaaatccagataaataaaacaaaatcaagagccatgttttatctcttctcaatcccttgcataatgg |
104 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||| |
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|
| T |
14208277 |
gtactacctttcgggacggagtatatcctacaaaaaatccggataaataaaacaaaatcaagagccctgttttatctattctcaataccttgcataatgg |
14208376 |
T |
|
| Q |
105 |
tgttagagaattgaattcacaacttaaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataacacacatttg |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| | |||||||||||| |
|
|
| T |
14208377 |
tgttagagaattgaa------acttaaataaaaggattcattgaagaatttaacaggacttggacacaatttcatagcctaaatataaaacacacatttg |
14208470 |
T |
|
| Q |
205 |
taacccaaaaagaacatgatttgtaaaagtaaatccatgaggcattcgatcaaacatgtaaaat |
268 |
Q |
| |
|
|||||| ||| |||||||| |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
14208471 |
taaccctaaatgaacatgagttgtaaaagt-aatccatgaggcattcaatcaaacatgtaaaat |
14208533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 19789846 - 19789726
Alignment:
| Q |
193 |
aacacacatttgtaacccaaaaagaacatgatttgtaaaagtaaatcca-tgaggcattcgatcaaacatgtaaaataagaaataattgaagatggaaaa |
291 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||||||||||||| | |||||||||| ||| |||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
19789846 |
aacacacatttgtaatccaaaaagaacataagttgtaaaagtaaatcaaatgaggcattcaatctaacaagtaaaataagaagtaatttaagatggaaaa |
19789747 |
T |
|
| Q |
292 |
attacccaaaagctgatgaat |
312 |
Q |
| |
|
|| || |||||| |||||||| |
|
|
| T |
19789746 |
atgacacaaaaggtgatgaat |
19789726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 19789957 - 19789896
Alignment:
| Q |
75 |
tttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaacttaaataaaa |
137 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
19789957 |
tttatctattctcaatcccttgtataatggtgtt-gaaagttgaattcacaacttaaataaaa |
19789896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 167 - 273
Target Start/End: Complemental strand, 43720624 - 43720518
Alignment:
| Q |
167 |
gagacaatttcaaagcctaaatacataacacacatttgtaacccaaaaagaacatgatttgtaaaagt-aaatcc-atgaggcattcgatcaaacatgta |
264 |
Q |
| |
|
||||||||| |||||||||||| | ||| |||||||||||||||| |||| |||| |||||||||| |||||| ||||||||||| |||||||||||| |
|
|
| T |
43720624 |
gagacaattccaaagcctaaatctagaactcacatttgtaacccaagaaga--atgagttgtaaaagtaaaatccaatgaggcattcaatcaaacatgta |
43720527 |
T |
|
| Q |
265 |
aaataagaa |
273 |
Q |
| |
|
||| ||||| |
|
|
| T |
43720526 |
aaagaagaa |
43720518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 14837040 - 14836949
Alignment:
| Q |
130 |
aaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataacacacatttgtaacccaaaaagaacatga |
223 |
Q |
| |
|
||||||||| |||||||||||||| ||| | || | ||||||||||| ||||||||| | | |||| ||||||| |||||||||||||||||| |
|
|
| T |
14837040 |
aaataaaagaattcattgaagaatgtaaaaggagt-ggagacaattttaaagcctaattctaaaaca-acatttgaaacccaaaaagaacatga |
14836949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 43720754 - 43720697
Alignment:
| Q |
43 |
ccagataaataaaacaaaatcaagagccatgttttatctcttctcaatcccttgcata |
100 |
Q |
| |
|
||||||||| |||| ||| ||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
43720754 |
ccagataaagaaaataaattcaaggtccatattttatctcttctcaatctcttgcata |
43720697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 273
Target Start/End: Complemental strand, 28022180 - 28021944
Alignment:
| Q |
43 |
ccagataaataaaacaaaatcaagagccatgttttatctcttctcaatcccttgcataatggtgttagagaattgaattcacaactta--------aata |
134 |
Q |
| |
|
||||||||| |||| ||| ||||| |||| |||||||||||||||||| |||||||| | ||| | || | ||||||||| ||| || || | |
|
|
| T |
28022180 |
ccagataaagaaaataaattcaaggtccatattttatctcttctcaatctcttgcatagtagtgct-gaaagttgaattcagaacctactgaataaaaga |
28022082 |
T |
|
| Q |
135 |
aaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataacacacatttgtaacccaaaaagaacatgatttgtaaaagt |
234 |
Q |
| |
|
|||| |||||||||||||| |||| || | ||||||||| |||||||||||| | || |||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
28022081 |
aaagaattcattgaagaatgtaac-ggaaattgagacaattccaaagcctaaatctagaattcacatttgtaacccaagaaga--atgagttgtaaaagt |
28021985 |
T |
|
| Q |
235 |
-aaatcc-atgaggcattcgatcaaacatgtaaaataagaa |
273 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
28021984 |
aaaatccaatgaggcattcaatcaaacatgtaaaagaagaa |
28021944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 32280643 - 32280552
Alignment:
| Q |
130 |
aaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataacacacatttgtaacccaaaaagaacatga |
223 |
Q |
| |
|
||||||||| |||||||||||||| ||| | || | ||||||||||| ||||||||| | | |||| |||||||||||||||||||||||||| |
|
|
| T |
32280643 |
aaataaaagaattcattgaagaatgtaaaaggagt-ggagacaattttaaagcctaattctaaaaca-acatttgtaacccaaaaagaacatga |
32280552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 32075978 - 32076069
Alignment:
| Q |
130 |
aaataaaaggattcattgaagaatttaacaagacttggagacaatttcaaagcctaaatacataacacacatttgtaacccaaaaagaacatga |
223 |
Q |
| |
|
||||||||| ||||||| |||||| ||| | || | ||||| ||||||||||||||| | | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
32075978 |
aaataaaagaattcattaaagaatgtaaaaggagt-ggagataatttcaaagcctaattctaaaacac-catttgtaacctaaaaagaacatga |
32076069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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