View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_high_8 (Length: 437)
Name: NF11233_high_8
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 39157740 - 39158156
Alignment:
| Q |
1 |
tagctagagcaatgttgaagaatccaccaatacttctgttagatgaggcaacaagtgctcttgacagtgtatcagagaatcttgtacaagaagcattgga |
100 |
Q |
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| T |
39157740 |
tagctagagcaatgttgaagaatccaccaatacttctgttagatgaggcaacaagtgctcttgacagtgtatcagagaatcttgtacaagaagcattgga |
39157839 |
T |
|
| Q |
101 |
gaaaatgatggttggaagaacatgtgtagttatagctcaccgtttgtcaacaatacaaagtgttgattccatagcagtgattaaaaatggaaaggtggtg |
200 |
Q |
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| T |
39157840 |
gaaaatgatggttggaagaacatgtgtagttatagctcaccgtttgtcaacaatacaaagtgttgattccatagctgtgattaaaaatggaaaggtggtg |
39157939 |
T |
|
| Q |
201 |
gaacaaggttctcattcacagttactgaatgatagatcaaatgggacttattactctttaattaggctacaacaaagtcattcaacttgatatgttgtgt |
300 |
Q |
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| T |
39157940 |
gaacaaggttctcattcacagttactgaatgatagatcaaatgggacttattactctttaattaggctacaacaaagtcattcaacttgatatgttgtgt |
39158039 |
T |
|
| Q |
301 |
aaacaattagttagtatatgagtttctgggattattattgcttttggttatattattttcagtatatggggcgagtccacttattatatcactgtgtgca |
400 |
Q |
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| T |
39158040 |
aaacaattagttagtatatgagtttctgggattattattgcttttggttatatta-tttcagtatatgg---gagtccacttattatatcactgtgtgca |
39158135 |
T |
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| Q |
401 |
atttagaataacacatatctg |
421 |
Q |
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| T |
39158136 |
atttagaataacacatatctg |
39158156 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 31442528 - 31442635
Alignment:
| Q |
18 |
aagaatccaccaatacttctgttagatgaggcaacaagtgctcttgacagtgtatcagagaatcttgtacaagaagcattggagaaaatgatggttggaa |
117 |
Q |
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||||||||| |||| ||||| | ||||| || |||||||| ||||| |||| ||||||| | | || ||||||||| | |||||||| |||||||||| |
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| T |
31442528 |
aagaatccagcaattcttcttctggatgaagctacaagtgcacttgatagtgcatcagaggttttagtccaagaagcacttgagaaaataatggttggaa |
31442627 |
T |
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| Q |
118 |
gaacatgt |
125 |
Q |
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|||||||| |
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| T |
31442628 |
gaacatgt |
31442635 |
T |
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