View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11233_low_12 (Length: 383)

Name: NF11233_low_12
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11233_low_12
NF11233_low_12
[»] chr2 (2 HSPs)
chr2 (1-371)||(6408954-6409327)
chr2 (68-132)||(9160696-9160760)
[»] chr1 (4 HSPs)
chr1 (72-132)||(1345184-1345244)
chr1 (77-132)||(1609457-1609512)
chr1 (75-119)||(19050386-19050430)
chr1 (62-133)||(9090198-9090269)
[»] chr6 (4 HSPs)
chr6 (67-132)||(11121767-11121832)
chr6 (68-131)||(5474476-5474540)
chr6 (67-115)||(9513573-9513621)
chr6 (76-132)||(24316971-24317027)
[»] chr3 (1 HSPs)
chr3 (68-132)||(9152541-9152605)
[»] chr8 (2 HSPs)
chr8 (68-119)||(3736032-3736083)
chr8 (67-119)||(3941352-3941404)
[»] chr7 (3 HSPs)
chr7 (68-119)||(21292681-21292732)
chr7 (68-119)||(24648708-24648759)
chr7 (68-133)||(7792623-7792688)
[»] chr4 (2 HSPs)
chr4 (75-132)||(22310284-22310341)
chr4 (75-119)||(29688570-29688614)
[»] chr5 (1 HSPs)
chr5 (68-116)||(29731334-29731382)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 6408954 - 6409327
Alignment:
Q  1 gaaccatctcagtaggttttacaccctcttaaaaatgtaatgtttaagnnnnnnnnnnnnn---atagatcaagagaaaaatgacatcaaaatgaatagt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||| |||||||||| ||||||||||||    
T  6408954 gaaccatctcagtaggttttacaccctcttaaaaatgtaatgtttaagttttttttttttttttatagatcaagagcaaaatgacattaaaatgaatagt 6409053  T
Q  98 gttcaattaagttggaaccctaatcttatttgttgcaatgtttaagttggttgtttcgtaacctatgagcaaaattaaattataaacattcacaaaatta 197  Q
     | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409054 atccaattaaattggaaccctaatcttatttgttgcaatgtttaagttggttgtttcgtaacctatgagcaaaattaaattataaacattcacaaaatta 6409153  T
Q  198 catcatcagtcgtttatgtttaactcttatttcagattgatctctgttgataaaaatattggtaaaaacatcttattttcctctcggctgataaccatcc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6409154 catcatcagtcgtttatgtttaactcttatttcagattgatctctgttgataaaaatattggtaaaaacatcttattttcctctcggctgataaccatcc 6409253  T
Q  298 attgacaaaaatctctagttgattgatctcaactatttcataaataaagttcatagatgtgtctcggttattct 371  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6409254 attgacaaaaatctctagttgattgatctcaactatttcttaaataaagttcatagatgtgtctcggttattct 6409327  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 9160760 - 9160696
Alignment:
Q  68 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 132  Q
    |||||| ||||||||||||||| |||| |||| ||| ||||||||||||||| ||| || |||||    
T  9160760 caagagtaaaatgacatcaaaaagaatggtgtccaactaagttggaaccctactctaatatgttg 9160696  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 1345184 - 1345244
Alignment:
Q  72 agaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 132  Q
    |||||||||||||||| | || |||||||||||||||||||||||||| |||||| |||||    
T  1345184 agaaaaatgacatcaataagagtagtgttcaattaagttggaaccctagtcttatctgttg 1345244  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 1609512 - 1609457
Alignment:
Q  77 aatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 132  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||| || |||||    
T  1609512 aatgacatcaaaaagaatagtgtccaattaagttggaaccctactctaatatgttg 1609457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 19050430 - 19050386
Alignment:
Q  75 aaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 119  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||    
T  19050430 aaaatgacataaaaaagaatagtgtccaattaagttggaacccta 19050386  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 9090269 - 9090198
Alignment:
Q  62 atagatcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttgc 133  Q
    ||||| |||||| |||||||||| |||| ||| | ||| |||||||||||||||| || |||||| ||||||    
T  9090269 atagaccaagagtaaaatgacataaaaaagaacaatgtacaattaagttggaaccatactcttatctgttgc 9090198  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 11121832 - 11121767
Alignment:
Q  67 tcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 132  Q
    ||||||| ||||||||||||||| ||||||||| ||| |||||||| |||||| ||| ||||||||    
T  11121832 tcaagagcaaaatgacatcaaaaagaatagtgtccaactaagttggtaccctactctaatttgttg 11121767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 131
Target Start/End: Complemental strand, 5474540 - 5474476
Alignment:
Q  68 caagagaaaaatgacatcaaaat-gaatagtgttcaattaagttggaaccctaatcttatttgtt 131  Q
    ||||||||||||||||| ||||  |||||||||  || |||||||||||||||||||||| ||||    
T  5474540 caagagaaaaatgacataaaaaaagaatagtgtcaaactaagttggaaccctaatcttatatgtt 5474476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 9513621 - 9513573
Alignment:
Q  67 tcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaac 115  Q
    ||||||| ||||||||||||||| ||||||||| ||| || ||||||||    
T  9513621 tcaagagcaaaatgacatcaaaaagaatagtgtccaactaggttggaac 9513573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 24317027 - 24316971
Alignment:
Q  76 aaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 132  Q
    |||||||||||||| ||||||||| ||| |||||||| |||||| ||| | ||||||    
T  24317027 aaatgacatcaaaaagaatagtgtccaactaagttggtaccctactctaaattgttg 24316971  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 9152605 - 9152541
Alignment:
Q  68 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 132  Q
    |||||| ||||||||||||||| ||||| | ||||| |||||||||||| || ||||||||||||    
T  9152605 caagagcaaaatgacatcaaaaagaatatttttcaactaagttggaaccatactcttatttgttg 9152541  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 3736083 - 3736032
Alignment:
Q  68 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 119  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  3736083 caagagcaaaatgacatcaaaaagaatagtgtccaattaagttggtacccta 3736032  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 3941352 - 3941404
Alignment:
Q  67 tcaagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 119  Q
    ||||||| ||||||||||||||| ||||||||| ||| || ||||||||||||    
T  3941352 tcaagagcaaaatgacatcaaaaagaatagtgtccaactatgttggaacccta 3941404  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 21292732 - 21292681
Alignment:
Q  68 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 119  Q
    |||||| ||||||| ||||||| ||||||||||||| |||||||| ||||||    
T  21292732 caagagcaaaatgatatcaaaaagaatagtgttcaactaagttggtacccta 21292681  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 24648759 - 24648708
Alignment:
Q  68 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 119  Q
    |||||| ||||||||||||||| ||||||||| ||| |||||||| ||||||    
T  24648759 caagagcaaaatgacatcaaaaagaatagtgtccaactaagttggtacccta 24648708  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 7792623 - 7792688
Alignment:
Q  68 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttgc 133  Q
    |||||| ||||||||||||||| ||||| |||  || |||||||| |||||| ||| |||||||||    
T  7792623 caagagcaaaatgacatcaaaaagaataatgtcaaactaagttggtaccctactctaatttgttgc 7792688  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 22310284 - 22310341
Alignment:
Q  75 aaaatgacatcaaaatgaatagtgttcaattaagttggaaccctaatcttatttgttg 132  Q
    ||||||||||  ||||||||||||| ||| |||||||||||  || ||||||||||||    
T  22310284 aaaatgacatagaaatgaatagtgtccaactaagttggaactatactcttatttgttg 22310341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 29688570 - 29688614
Alignment:
Q  75 aaaatgacatcaaaatgaatagtgttcaattaagttggaacccta 119  Q
    ||||||||||||||| |||||| |||||| |||||||| ||||||    
T  29688570 aaaatgacatcaaaaagaatagagttcaactaagttggcacccta 29688614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 29731382 - 29731334
Alignment:
Q  68 caagagaaaaatgacatcaaaatgaatagtgttcaattaagttggaacc 116  Q
    |||||| |||||||||| |||||| ||||||| ||| ||||||||||||    
T  29731382 caagagtaaaatgacataaaaatggatagtgtccaactaagttggaacc 29731334  T

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