View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11233_low_13 (Length: 376)
Name: NF11233_low_13
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 364
Target Start/End: Complemental strand, 44944710 - 44944362
Alignment:
| Q |
16 |
cagtatcaagctcactgtttgaggtccccaagttccttccctttaggaggcatggctttgcctctaatcccacacttaaacttgtttgaatttaggcttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44944710 |
cagtatcaagctcactgtttgaggtccccaagttccttccctttaggaggcatggctttgcctctaatcccacacttaaacttgtttgaatttaggcttg |
44944611 |
T |
|
| Q |
116 |
tttcatgttcaaagcttgtaatgtattttaatagcagttttaattttgattagcatattaccctcacatactccataagtcctataatgttcaattgatc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44944610 |
tttcatgttcaaagcttgtaatgtattttaatagcagttttaattttgattagcatattaccctcacatactccataagtcctataatgttcaattgatc |
44944511 |
T |
|
| Q |
216 |
ccttatgttgtgccttcctttcnnnnnnnngaacaaatgttgggactaccctttaaaacaaggctcgtcctagtttttaatgaacaaatgctgtgccatc |
315 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44944510 |
ccttatgttgtgccttcctttttttttgttgaacaaatgttgggactgccctttaaaacaaggctcgtcctagtttttaatgaacaaatgttgtgccatc |
44944411 |
T |
|
| Q |
316 |
ctagtaattcctataaggttcaattaagtacatgaagaaatgtggttct |
364 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44944410 |
ctagtaattcctataaggtttaattaagtacatgaagaaatgtggttct |
44944362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University