View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_low_15 (Length: 331)
Name: NF11233_low_15
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 40 - 313
Target Start/End: Complemental strand, 49278687 - 49278418
Alignment:
| Q |
40 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
139 |
Q |
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| T |
49278687 |
attacaaatgatttttgaaaaagacagcagaaaattgattatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaa |
49278588 |
T |
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| Q |
140 |
attagtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttct |
239 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49278587 |
atttgtttattatatctatatgaggaggggtcaagttacacacgatgcatatggcatgtatgtcactcatacactattttaggattttccatatttttct |
49278488 |
T |
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| Q |
240 |
ccacacctccctgatatcctcctccgctcaaagatttggcttgttttcattcttgataaattcgggacaaactt |
313 |
Q |
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| T |
49278487 |
ccccacctccctgatatc---ctccgctcaaagatttggcttg-tttcattcttgataaattcgggataaactt |
49278418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 49285402 - 49285302
Alignment:
| Q |
79 |
tatcagtgtctaattttggctcacctattcacttcatgcgttgtgttttatgcttaataaaattagtttattatatctatatgaggaggggtcaagttac |
178 |
Q |
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|||| ||||||| |||||||||||||||||| ||| || |||| | |||||||||||||||||| | ||||||||| |||||||||| ||||||||| |
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| T |
49285402 |
tatcggtgtctatttttggctcacctattcatttcttgtgttgggatttatgcttaataaaatttcctgattatatctgcatgaggagggatcaagttac |
49285303 |
T |
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| Q |
179 |
a |
179 |
Q |
| |
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| |
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| T |
49285302 |
a |
49285302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 862084 - 862026
Alignment:
| Q |
191 |
tggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
250 |
Q |
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| T |
862084 |
tggcatgtatgtcactcatccactagtttatga-tttccatctttttctccccacctccc |
862026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 49278747 - 49278718
Alignment:
| Q |
10 |
gcagagaggcctttaatgaggttacccttc |
39 |
Q |
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| T |
49278747 |
gcagagaggcctttaatgaggttacccttc |
49278718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 7938451 - 7938520
Alignment:
| Q |
181 |
acgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctccacacctccc |
250 |
Q |
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| T |
7938451 |
acgatacatgtggcatgtatgccactcatccactattttaggattttccatatttttctcccaacctccc |
7938520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 52329253 - 52329193
Alignment:
| Q |
180 |
cacgatgcatatggcatgtatgtcactcatccactattttaggattttccatatttttctc |
240 |
Q |
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|||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52329253 |
cacgatacatgtggcatgtatgctactcatccactattttaggattttccatatttttctc |
52329193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 246
Target Start/End: Complemental strand, 31416027 - 31415992
Alignment:
| Q |
211 |
cactattttaggattttccatatttttctccacacc |
246 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
31416027 |
cactattttaggattttccatatttttctccccacc |
31415992 |
T |
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