View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_low_16 (Length: 288)
Name: NF11233_low_16
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 47728574 - 47728349
Alignment:
| Q |
17 |
acttaggtgaatgaatgaattaatatctttaagttaaccatttgcagggctgccagcaaacttgaatggggtgctttgtatattctagcaaaagatgaac |
116 |
Q |
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| T |
47728574 |
acttaggtgaatgaatgaaataatatctttaagttaaccatttgcagggctgccagcaaacttgaatggggggctttgtatattctagcaaaagatgaac |
47728475 |
T |
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| Q |
117 |
aaggttttctgtcaaaagaagctgtgagacgttgttttgatggaagcctatttgagtattgtgctaaaatgcgtaatggtccagttgaaaagatggcttg |
216 |
Q |
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| T |
47728474 |
aaggttttctgtcaaaagaagctgtgagacgttgttttgatggaagcctatttgagtactgtgctaaaatgcgtaatggtccagttgaaaagatggcttg |
47728375 |
T |
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| Q |
217 |
acaacttcttaagtaatattcagtgt |
242 |
Q |
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| T |
47728374 |
acaacttcttaagtaatattcagtgt |
47728349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 47728307 - 47728268
Alignment:
| Q |
241 |
gtacattattgcacttcaatgcttttcttctacctttgct |
280 |
Q |
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| T |
47728307 |
gtacattattgcacttcaatgcttttcttctacctttgct |
47728268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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