View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11233_low_17 (Length: 278)

Name: NF11233_low_17
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11233_low_17
NF11233_low_17
[»] chr1 (2 HSPs)
chr1 (1-261)||(48911814-48912075)
chr1 (64-122)||(4108632-4108690)
[»] chr5 (3 HSPs)
chr5 (71-119)||(29372226-29372274)
chr5 (71-119)||(7509677-7509725)
chr5 (64-122)||(18924402-18924460)
[»] chr3 (3 HSPs)
chr3 (64-122)||(27948425-27948483)
chr3 (71-119)||(21980651-21980699)
chr3 (71-119)||(22003082-22003130)
[»] chr7 (1 HSPs)
chr7 (71-122)||(26048890-26048941)
[»] chr2 (2 HSPs)
chr2 (64-122)||(2280112-2280170)
chr2 (1-49)||(8962212-8962260)
[»] chr8 (2 HSPs)
chr8 (4-49)||(14109669-14109714)
chr8 (4-49)||(35971967-35972012)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 48912075 - 48911814
Alignment:
Q  1 tccggtaggagacgagaataggtctcctactataggagacattaaaaaatggtgannnnnnnn--gtataataaaaatgacatttgtcaccattagatta 98  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||          |||||| |||||||||||||||||||||||||||     
T  48912075 tccggtaggagacgagaataggtctcctactgtaggagacattaaaaaatggtgattttttttttgtataacaaaaatgacatttgtcaccattagattg 48911976  T
Q  99 atgaagaacattgatcttactatatattttgagatgctaagtagagtttgagcttgtagtatattattttttatcttcattatcttaaatgaaaaaattt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  48911975 atgaagaacattgatcttactatatattttgagatgctaagtagagtttgagcttgtagtataatatttttaatcttcattatcttaaatgaaaaaattt 48911876  T
Q  199 aaatactacttaaaaattactttatgtcattttatatttacttagttagttcatccattaatt 261  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48911875 aaatactacttaaaaattactttatgtcattttatatttac-tagttagttcatccattaatt 48911814  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 4108690 - 4108632
Alignment:
Q  64 gtataataaaaatgacatttgtcaccattagattaatgaagaacattgatcttactata 122  Q
    |||||| |||||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  4108690 gtataacaaaaatgacacttgtcaccgttagattgatgaagaacattgatcttactata 4108632  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 29372274 - 29372226
Alignment:
Q  71 aaaaatgacatttgtcaccattagattaatgaagaacattgatcttact 119  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29372274 aaaaatgacatttgtcaccattagattgatgaagaacattgatcttact 29372226  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 7509725 - 7509677
Alignment:
Q  71 aaaaatgacatttgtcaccattagattaatgaagaacattgatcttact 119  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  7509725 aaaaatgacatttgtcaccattagattgatgaagaacactgatcttact 7509677  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 18924460 - 18924402
Alignment:
Q  64 gtataataaaaatgacatttgtcaccattagattaatgaagaacattgatcttactata 122  Q
    |||||| ||||||||| | ||||||||||  ||| ||||||||||||||||||||||||    
T  18924460 gtataacaaaaatgacttgtgtcaccattgaattgatgaagaacattgatcttactata 18924402  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 27948425 - 27948483
Alignment:
Q  64 gtataataaaaatgacatttgtcaccattagattaatgaagaacattgatcttactata 122  Q
    ||||||||||||||||| |||||||| ||| ||| | ||||||||||||||||||||||    
T  27948425 gtataataaaaatgacacttgtcaccgttatattgacgaagaacattgatcttactata 27948483  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 21980651 - 21980699
Alignment:
Q  71 aaaaatgacatttgtcaccattagattaatgaagaacattgatcttact 119  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  21980651 aaaaatgacatttgtcaccattagattgatgaagaacactgattttact 21980699  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 22003082 - 22003130
Alignment:
Q  71 aaaaatgacatttgtcaccattagattaatgaagaacattgatcttact 119  Q
    ||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  22003082 aaaaatgacatttgtcaccattagattgatgaagaacactgattttact 22003130  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 122
Target Start/End: Original strand, 26048890 - 26048941
Alignment:
Q  71 aaaaatgacatttgtcaccattagattaatgaagaacattgatcttactata 122  Q
    ||||||||||| ||| || |||||||| ||||||||||||| ||||||||||    
T  26048890 aaaaatgacatatgttactattagattgatgaagaacattggtcttactata 26048941  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 2280170 - 2280112
Alignment:
Q  64 gtataataaaaatgacatttgtcaccattagattaatgaagaacattgatcttactata 122  Q
    |||||| |||||||| | |||||||| ||| ||| | ||||||||||||||||||||||    
T  2280170 gtataacaaaaatgaaacttgtcaccgttatattgacgaagaacattgatcttactata 2280112  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8962260 - 8962212
Alignment:
Q  1 tccggtaggagacgagaataggtctcctactataggagacattaaaaaa 49  Q
    |||||||||||||   ||||||||||||||| |||||||||||| ||||    
T  8962260 tccggtaggagacttaaataggtctcctactgtaggagacattataaaa 8962212  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 14109714 - 14109669
Alignment:
Q  4 ggtaggagacgagaataggtctcctactataggagacattaaaaaa 49  Q
    ||||||||||  |||||||||||||||  |||||||||||||||||    
T  14109714 ggtaggagacttgaataggtctcctacagtaggagacattaaaaaa 14109669  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 35972012 - 35971967
Alignment:
Q  4 ggtaggagacgagaataggtctcctactataggagacattaaaaaa 49  Q
    ||||||||||  |||||||||||||||  |||||||||||||||||    
T  35972012 ggtaggagacttgaataggtctcctacggtaggagacattaaaaaa 35971967  T

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