View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_low_25 (Length: 235)
Name: NF11233_low_25
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 23278003 - 23278154
Alignment:
| Q |
1 |
caccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcagagtacgatccaccatcaccaccgtaaactttcttggcaacctgaggaga |
100 |
Q |
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| T |
23278003 |
caccaatgttaccttcacgcaacataggaagctcagaaggtgaccaagcgtagtacgatccaccatcgccaccgtaaactttcttggcaacctgaggaga |
23278102 |
T |
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| Q |
101 |
aagatcgatatccatagcaacaacaca-aaaatcgaacgatcaaacgaaaaa |
151 |
Q |
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| T |
23278103 |
aagatcgatatccatagcaacaacgcacaaaatcgaacgatcacacgaaaaa |
23278154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 27544029 - 27544190
Alignment:
| Q |
1 |
caccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcagagtacgatccaccatcaccaccgtaaactttcttggcaacctgaggaga |
100 |
Q |
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| T |
27544029 |
caccaatgttaccttcacgcaacataggaagttcagaaggagaccatgcatagtacgatccaccatcaccaccgtacactttcttagccaattgaggaga |
27544128 |
T |
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| Q |
101 |
aagatcgatatccatagcaacaacacaaaaatcgaacgatcaaacgaaaaagtaaaggaaag |
162 |
Q |
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| T |
27544129 |
aagatcgatatccatagcaacaacacaaaaattgaacgatcacacgaaaaagcaaagcaaag |
27544190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 23260105 - 23260299
Alignment:
| Q |
1 |
caccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcagagtacgatccaccatcaccaccgtaaactttcttggcaacctgaggaga |
100 |
Q |
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| T |
23260105 |
caccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcatagtacgatccaccatcgccgccgtaaacttccttggccatttgaggaga |
23260204 |
T |
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| Q |
101 |
aagatcgatatccatagcaacaacacaaaaatcgaacgatcaaacgaaaaagtaaaggaaagagaaaattttgaagagaatgtgtttttgagtgcatgtg |
200 |
Q |
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| T |
23260205 |
aagattgatatccatgataacaacacaaaaatcgaacgatcacacaaaaaagcaaagcagaggaaaaaatttg------atgtgtttttgagtgcatgtg |
23260298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 11134990 - 11134840
Alignment:
| Q |
1 |
caccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcagagtacgatccaccatcaccaccgtaaactttcttggcaacctgaggaga |
100 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || | |||||||| |
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| T |
11134990 |
caccaatgttaccttcacgtaacataggaagctcagaaggagaccaagcatagtacgatccaccatcaccaccgtacactttctttgccaattgaggaga |
11134891 |
T |
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| Q |
101 |
aagatcgatatccatagcaacaacacaaaaatcgaacgatcaaacgaaaaa |
151 |
Q |
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||||| |||||||||||||| | | ||||| ||||||||| |||||||| |
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| T |
11134890 |
aagattaatatccatagcaaccaaaacaaaattgaacgatcacacgaaaaa |
11134840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 23278173 - 23278214
Alignment:
| Q |
180 |
atgtgtttttgagtgcatgtgggttaggtgtgtatttataagt |
222 |
Q |
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| T |
23278173 |
atgtgtttttgattgcatgtgg-ttaggtgtgtatttataagt |
23278214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12280134 - 12280058
Alignment:
| Q |
1 |
caccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcagagtacgatccaccatcaccaccgtaa |
77 |
Q |
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| T |
12280134 |
caccaatgttaccttgacgcaacataggaagctcagaaggagaccaagcagagtacgatccaccatcaccaccgtaa |
12280058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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