View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_low_29 (Length: 215)
Name: NF11233_low_29
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 15284726 - 15284543
Alignment:
| Q |
14 |
atgaatgaaagacacaaccaataatgtacttgtctcgtatacaatcatcggctaatcattcacaagtatacacattaactcataagatattctaatcgtt |
113 |
Q |
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| T |
15284726 |
atgaatgaaagacacagtcaataatgtacttttatcgtatacaatcatcgactaatcattcacaagtatacacattaacacataagatattctaatcgtt |
15284627 |
T |
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| Q |
114 |
ttccccattctttacgtatccggatcatctcctcgaggatccaattttcttcttcatcatctccaaaataatctcattccaagt |
197 |
Q |
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| T |
15284626 |
ttcccccttctttacgtatccggatcatctcctcgatgatccagatttcttcttcatcatctccaacaaaatctcattccaagt |
15284543 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Original strand, 11806900 - 11806935
Alignment:
| Q |
162 |
cttcttcatcatctccaaaataatctcattccaagt |
197 |
Q |
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| T |
11806900 |
cttcttcatcatctccaaaaaaatctcattccaagt |
11806935 |
T |
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