View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11233_low_4 (Length: 528)
Name: NF11233_low_4
Description: NF11233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11233_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 19796780 - 19796281
Alignment:
| Q |
13 |
gcagagagaatgatgttgaacccttgcatagaaaattcatgaagaaaacttgagaaactatcatcactggaaatcaaaagaatattggcagggggaggat |
112 |
Q |
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| T |
19796780 |
gcagaaagaatgatgttgaacccttgcatagaaaattcatgaagaaaacttgagaaactatcatcactggaaatcaaaagaatattggcagggggaggat |
19796681 |
T |
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| Q |
113 |
tctgtaacgcccatattaacaaatccggcatgatcccattgtagacacctgaaataaaaactcggttatgattgattatggagaagttcataaaataaaa |
212 |
Q |
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| T |
19796680 |
tctgtaacgcccatattaacaaatccggcatgatcccattgtagacacctgaaataaaaactcggttatgattgattatggagaagttcataaaataaaa |
19796581 |
T |
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| Q |
213 |
taatgtgattattattatgaataaaaaagtaaatacctcctttggtggggaggagacggagggagattcccatgatataaagtgcgcgtcgaaccttact |
312 |
Q |
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| T |
19796580 |
taatgtgattattattatgaataaaaaagtaaatacctcctttggtggggaggagacggagggaggttcccatgatataaagtgcgcgtcgaaccttact |
19796481 |
T |
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| Q |
313 |
agggatgagatcggagtttccataagcagaaatggttagtctgccatgaaggttgacattggagagagctaagtgaatattcttagcaatgtagtaaatg |
412 |
Q |
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| T |
19796480 |
agggatgagatcggagtttccataagcagaaatggttagtctgccatgaaggttgacattggagagagctaagtgaatattcttagcaatgtagtaaatg |
19796381 |
T |
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| Q |
413 |
tcatcaaaattattggttggaaattgacaggtttcaatgt-ccaccaaactgaaatatttgcatttgcatttgcattttccatagtcatcaactacaaat |
511 |
Q |
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| T |
19796380 |
tcatcaaaattattggttggaaattgacaggtttcaatgtcccaccaaactgaaatatttgcatttgcatttgcattttccatagtcatcaactacaaat |
19796281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 403
Target Start/End: Complemental strand, 19797237 - 19797144
Alignment:
| Q |
310 |
actagggatgagatcggagtttccataagcagaaatggttagtctgccatgaaggttgacattggagagagctaagtgaatattcttagcaatg |
403 |
Q |
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| T |
19797237 |
actagcgatgagatttgtgtttccataagcagaaatggatagtttgccacgaaggttggcttttaagagagctaatcgaatattattaacaatg |
19797144 |
T |
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